PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8211
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 221aa    MW: 25623.2 Da    PI: 8.9817
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8211genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP69.56.6e-2271118148
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                               +Cq+e+Ce+dl+ +k+yhrrhkvCe+hsk p v+++gl+qrfCqqCsr
  Tp57577_TGAC_v2_mRNA8211  71 ICQAENCETDLTFMKRYHRRHKVCEFHSKVPYVMIAGLRQRFCQQCSR 118
                               5**********************************************9 PP
2SBP45.32.4e-141411714777
                               SSEEETTT--SS--S-STTTT-------S-- CS
                       SBP  47 srfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                rfhel efDe+krsCr+rLa+hnerrrk++
  Tp57577_TGAC_v2_mRNA8211 141 CRFHELIEFDEAKRSCRKRLARHNERRRKSN 171
                               69***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-2867157IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.56469170IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.81E-2270120IPR004333Transcription factor, SBP-box
PfamPF031101.4E-1572119IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.16E-11141174IPR004333Transcription factor, SBP-box
PfamPF031104.1E-8142169IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
LLLSFLTTLT YTMEASSNTL GIPKTSVEEI ESEEKEEEDE NVGVEEDEKK KSVCVSRRKG  60
TSRGGRFSTP ICQAENCETD LTFMKRYHRR HKVCEFHSKV PYVMIAGLRQ RFCQQCSRCS  120
FSIPHIILKN LKFHKPMIIV CRFHELIEFD EAKRSCRKRL ARHNERRRKS NTGNFNEGRS  180
TSIKGQEIND GDFRNIHMNM KSSSSGHENI HKFLISNEYP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-26711691084squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8211
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464662.12e-58squamosa promoter-binding-like protein 3
TrEMBLA0A072VA584e-57A0A072VA58_MEDTR; Squamosa promoter-binding-like protein
STRINGXP_004488736.14e-56(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.14e-33squamosa promoter binding protein-like 3