PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8297
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 267aa    MW: 30963.7 Da    PI: 7.7402
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8297genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.63.3e-11155240177
                               EEEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                        B3   1 ffkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                               f+k+l+ sd     +rl + k+++e++        +++ e ++ ++ +d +gr++++k++++ k+  ++ ++GW++F +++ L++
  Tp57577_TGAC_v2_mRNA8297 155 FEKKLMMSDLKVDqNRLLMNKSHVEDYfvpllregEENIEDGINVVAYDMQGRTFNMKFKFWSKKVYVLTGTGWRNFFEEHSLQA 239
                               7888888886544499*****************9866667999*********************9888888************96 PP

                               T CS
                        B3  77 g 77 
                               +
  Tp57577_TGAC_v2_mRNA8297 240 N 240
                               5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-14155259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-14155253IPR015300DNA-binding pseudobarrel domain
CDDcd100175.68E-13155265No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MNRSSKMKEK VYDFYPMDFN RDEHEVAAIL LHMPMLHIAQ VMEKRKNVKI TLGGKPISKI  60
RKEINNNNSV DAMSHINIPD VVMENNNVHA MPQNNIVHAI SQINISDIVM ENNNVHAMPQ  120
INIPDVVMEN VNNPLDIPTI PGVPNNNILQ CCKPFEKKLM MSDLKVDQNR LLMNKSHVED  180
YFVPLLREGE ENIEDGINVV AYDMQGRTFN MKFKFWSKKV YVLTGTGWRN FFEEHSLQAN  240
RDHVKVWMFR HSQTNNICFA FGIRRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8297
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598455.18e-62putative B3 domain-containing protein At4g03170
TrEMBLA0A2K3LR191e-139A0A2K3LR19_TRIPR; Ap2 b3-like transcriptional factor family protein
STRINGAES686986e-61(Medicago truncatula)
STRINGAES687063e-61(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.19e-22B3 family protein