PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8334
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 262aa    MW: 30179.7 Da    PI: 6.9633
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8334genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.4e-082571246
                              SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                                W+ e+ +++  a + + ++   +W ++a++++ g+t ++++  ++ 
  Tp57577_TGAC_v2_mRNA8334 25 TEWSREDNKKFESALAIYDKDtpdRWLKVAEMIP-GKTVYDVIKQYRE 71
                              68********************************.********99986 PP
2Myb_DNA-binding42.61.4e-13126170347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
  Tp57577_TGAC_v2_mRNA8334 126 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 170
                               8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.7812276IPR017884SANT domain
SMARTSM007171.2E-82375IPR001005SANT/Myb domain
SuperFamilySSF466893.05E-112579IPR009057Homeodomain-like
PfamPF002494.5E-62571IPR001005SANT/Myb domain
CDDcd001674.00E-62672No hitNo description
PROSITE profilePS5129420.215119175IPR017930Myb domain
SuperFamilySSF466893.23E-16121175IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-17122174IPR006447Myb domain, plants
SMARTSM007175.6E-11123173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-11123169IPR009057Homeodomain-like
CDDcd001672.50E-8126170No hitNo description
PfamPF002494.6E-11126170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDLETLYSPY FMLDSNWFVE ESYKTEWSRE DNKKFESALA IYDKDTPDRW LKVAEMIPGK  60
TVYDVIKQYR ELEEDVCEIE AGNVPIPGYL SSSFTFEVVE NQNYDGSKRR HVTVRGSDHE  120
RKKGVPWTEE EHRRFLMGLL KYGKGDWRNI SRNFVVTKTP TQVASHAQKY YIRQKVSSGG  180
KDKRRPSIHD ITTVTLTETS SASDNKQKMG WTSSHYNDGS LQGQDLYDCS FHESYAKMKV  240
SGFATASRDF NKEAVFGIHA L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-17271021186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8334
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0519840.0BT051984.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-K-6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616568.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-81DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2K3MY320.0A0A2K3MY32_TRIPR; Transcription factor DIVARICATA-like protein
STRINGAES995260.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-88MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]