PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8362
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 504aa    MW: 55748.9 Da    PI: 4.5722
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8362genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.9e-36321232102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d++++ ++sws+++nsfvv+d+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F
  Tp57577_TGAC_v2_mRNA8362  32 FLSKTYDMVDDSSTDAIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGF 107
                               9********************999*****************************************999.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                                +g+k+ll++i r+k 
  Tp57577_TGAC_v2_mRNA8362 108 LRGQKHLLKSITRRKP 123
                               *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.6E-4023116IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-3628121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-6428121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-203255IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3232121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDGASGVSGG GEVSAQLPVP TPMQNSNAPP PFLSKTYDMV DDSSTDAIVS WSATNNSFVV  60
WDPPEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG QKHLLKSITR  120
RKPAHGPNNQ QAQQPHGQSS SVGACVEVGK FGLEEEVERL KRDKNVLMQE LVRLRQQQQT  180
TDGQLQTMVQ RLQGMEQRQQ QMMSFLAKAV QSPGFFAQFV QQQNDSNRRI TEVNKKRRLK  240
QDGIAETTER ASPPDGQIVK YQPLMNETAK AMLRKIMKWD TPRVESFSKN PDNYLIGDGT  300
SPSSAMDSSS SSSWNSGVTL QEVPPSSVQS SQFPAATGTQ GHIPSAENPE ILSVPQAAAA  360
SENVMKDGAR AAPTIPTSQA DVIMPDIRSI PEIVPRSILD IPEDNYMAPG TDDGFMDPTS  420
LESFSLDFED LSPGADIDDL LNNPIWDDFL QTSAPEDLET NVDKISRGNE VQPTENGWDN  480
NNTQHLDQLT EQMGLLSSDV KRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2741214129Heat shock factor protein 1
5d5v_B1e-2741214129Heat shock factor protein 1
5d5v_D1e-2741214129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233240NKKRRLKQ
2234239KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8362
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9072350.0DQ907235.1 Medicago sativa heat shock transcription factor 1 (HSF1) mRNA, HSF1-b2 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612845.10.0heat shock factor protein HSF8 isoform X1
SwissprotQ401521e-173HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A2K3MLV40.0A0A2K3MLV4_TRIPR; Heat stress transcription factor a-1d-like protein
STRINGAES958030.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-143heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]