PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8364
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 201aa    MW: 23381.4 Da    PI: 8.3497
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8364genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.91.2e-17142177136
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                               Cs+C+t++T++WR+gp g  tLCnaCGl++++++l+
  Tp57577_TGAC_v2_mRNA8364 142 CSHCKTKDTTQWRNGPLGRNTLCNACGLRFKSNRLM 177
                               ********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-14134180No hitNo description
PROSITE profilePS5011411.477136174IPR000679Zinc finger, GATA-type
SMARTSM004014.7E-15136186IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.9E-15140175IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.80E-15141192No hitNo description
PROSITE patternPS003440142167IPR000679Zinc finger, GATA-type
PfamPF003203.8E-15142177IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAMYHHYYSS AQYNEKEIEE QLCYIPHDAL QNLEWYPTFS ETMEKSLQED LNYLLFCDTQ  60
EKETLKFNQL GEGIPQENMS NVQINQEGNT DTSLANIHIK NHENLPKNNV KSQSKEKGLK  120
VKKSKDKGLK AKKIDNYKER ICSHCKTKDT TQWRNGPLGR NTLCNACGLR FKSNRLMEGY  180
KPRASSNLDM IKEFRFSQEI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8364
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072TY391e-58A0A072TY39_MEDTR; GATA type zinc finger transcription factor family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1898726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.17e-17GATA transcription factor 12