PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8376
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 340aa    MW: 38437.1 Da    PI: 6.314
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8376genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.5e-191461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEde+l+d+++++G g+W t +++  ++R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA8376 14 KGPWTQEEDEKLIDYINKHGHGNWGTLSKRADLNRCGKSCRLRWTNYL 61
                              79********************************************97 PP
2Myb_DNA-binding52.41.2e-1667110146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg++T eE+  +++++  lG++ W++Ia++++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA8376  67 RGKFTDEEERVIINLHSVLGNK-WSKIAAHLP-GRTDNEIKNFWNT 110
                               89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.364961IPR017930Myb domain
SuperFamilySSF466896.11E-3211108IPR009057Homeodomain-like
SMARTSM007171.9E-161363IPR001005SANT/Myb domain
PfamPF002495.4E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-251568IPR009057Homeodomain-like
CDDcd001677.12E-131661No hitNo description
PROSITE profilePS5129426.88862116IPR017930Myb domain
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002496.3E-1567110IPR001005SANT/Myb domain
CDDcd001671.55E-1169112No hitNo description
Gene3DG3DSA:1.10.10.602.8E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRSPCCDEI GVKKGPWTQE EDEKLIDYIN KHGHGNWGTL SKRADLNRCG KSCRLRWTNY  60
LRPDIKRGKF TDEEERVIIN LHSVLGNKWS KIAAHLPGRT DNEIKNFWNT NIRKKLLKMG  120
IDPETHKPRT DYNHLMNLSN LLGMSNIGNT FSNNPLGFQP DITHLAKMQL LQNMLQIMNT  180
NNSFGNMGNY PYNPLGNITP SLNPFNLFLN GTNTIQTKDP LVLSGGEEYN MIPSLYSHGQ  240
SEDISKGGSS LESVDYSKMR NISCENQEEN LLPSLVASSP RISTFNQMES CNKAQMSIDE  300
SPSNTTFDDW EKFLDDESNG SYWKELLDLT STSASQISW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8376
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541950.0CR954195.3 Medicago truncatula chromosome 5 clone mth2-16p13, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612858.20.0transcription factor MYB41
TrEMBLA0A396HN750.0A0A396HN75_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES958160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.13e-91myb domain protein 107