PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8547
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 331aa    MW: 37920.6 Da    PI: 4.6849
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8547genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.88e-111462142
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcks 42
                              +g+WTteEd++l++ +   G  +W+++++  g       + R++k+c++
  Tp57577_TGAC_v2_mRNA8547 14 KGPWTTEEDKRLINFILTNGQCCWRAVPKLAGllllpywLLRCGKSCRL 62
                              79*************************************9*******95 PP
2Myb_DNA-binding51.13e-1676116547
                               -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Tp57577_TGAC_v2_mRNA8547  76 SEYEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 116
                               6779**************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-14568IPR009057Homeodomain-like
PROSITE profilePS500907.352961IPR017877Myb-like domain
SuperFamilySSF466892.81E-2011113IPR009057Homeodomain-like
SMARTSM007170.0031368IPR001005SANT/Myb domain
PfamPF002493.6E-91462IPR001005SANT/Myb domain
PROSITE profilePS5129425.60967121IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2469122IPR009057Homeodomain-like
SMARTSM007173.8E-1471119IPR001005SANT/Myb domain
PfamPF002494.9E-1476116IPR001005SANT/Myb domain
CDDcd001671.31E-1079117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTTE EDKRLINFIL TNGQCCWRAV PKLAGLLLLP YWLLRCGKSC  60
RLTNYLRPDL KRGLLSEYEE KMVIDLHAQL GNRWSKIASH LPGRTDNEIK NHWNTHIKKK  120
LKKMGIDPLS HKPLVPTNAT NNQTQNQPIE EQQLQPIQKE QQNQQQPLTI NINDTKFESK  180
IEDIEKQETS IESSTIIEVK EKDDITIIPS IDTMELVDGF CIDEVPMIEP NEIIVSNTSS  240
SSSSNSTNFL EDLHDLLDFE WTNNNNKEED NANNMAFWDD DFISSLNLLI NDDDYGVNNG  300
KRNQEFDAHA PLSKNSRMVT DSESWAYDLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-23121215108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8547
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616278.11e-156transcription factor MYB20
SwissprotQ9C7U76e-89MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A396HU851e-154A0A396HU85_MEDTR; Putative transcription factor MYB-HB-like family
TrEMBLG7K1N81e-154G7K1N8_MEDTR; Myb transcription factor
STRINGAES992361e-155(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.18e-80myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]