PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8586
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 759aa    MW: 83586.8 Da    PI: 5.338
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8586genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-1970121152
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                               +r+ +++t+eq+eeL ++F+kn yp+ +er+eL+++lgL+ +q+k+WFqNrR
  Tp57577_TGAC_v2_mRNA8586  70 KRNYRRHTQEQIEELDTFFKKNAYPDDKERKELSRRLGLDLSQIKFWFQNRR 121
                               688999********************************************** PP
2START135.65.2e-4328949115206
                               HHC-TT-EEEEEXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT. CS
                     START  15 laeepgWvkssesengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg. 88 
                               +++ p+W     s+ng+e++ +f++s+        + + +++s+vv+ ++  lv +++d++ qW++++     +a+tl+v+s+g 
  Tp57577_TGAC_v2_mRNA8586 289 TSGPPLWLPTN-SLNGEEYMLQFPTSNIgpnpmkLRHDGSKESAVVFINPISLVDIFMDVS-QWSNMFCgivsRAATLNVLSTGv 371
                               56667888777.99*********999989***9999999**********************.******99*************** PP

                               .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
                     START  89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                                    galq+m+ae+q+ sp  p  + +fvRy++ l+   wv++d+ +d+ ++     s+ R ++++Sg+li++++n +s+vtw+
  Tp57577_TGAC_v2_mRNA8586 372 agnydGALQVMSAEFQVASPSIPtLENYFVRYCKLLPNSIWVVADIPLDNFSPT----SISRTKRRVSGCLIQELPNDYSNVTWI 452
                               *********************************************888777765....58************************* PP

                               E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               eh +++++ ++ ++ +l++sgla+gak+w a lqrqce+
  Tp57577_TGAC_v2_mRNA8586 453 EHLEVEDNEVQTIYTPLINSGLAFGAKRWIAILQRQCER 491
                               *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-1947122IPR009057Homeodomain-like
SuperFamilySSF466896.68E-1857125IPR009057Homeodomain-like
PROSITE profilePS5007116.95767127IPR001356Homeobox domain
SMARTSM003892.4E-1869131IPR001356Homeobox domain
CDDcd000861.60E-1870121No hitNo description
PfamPF000468.3E-1770121IPR001356Homeobox domain
PROSITE profilePS5084829.014265494IPR002913START domain
SuperFamilySSF559611.28E-22270492No hitNo description
CDDcd088753.46E-91270490No hitNo description
SMARTSM002341.6E-31274491IPR002913START domain
PfamPF018521.5E-34290491IPR002913START domain
SuperFamilySSF559618.79E-14513751No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MLSSSSSSSS SSSSSSSPQH NHFMNNMFEE ELLKANDERY QMEFGGPSKQ SDEQQQPNQD  60
EQQPNQCLKK RNYRRHTQEQ IEELDTFFKK NAYPDDKERK ELSRRLGLDL SQIKFWFQNR  120
RNGLKVRSER EENELLKAEI EKLRAEMNRY KTTPSTCNVC GIPATHMMSN EQQQLKLENA  180
LLRKEVSLLL WVILNCAFGL EKFGAQNPIN PVDSYNNISS PPNSNQGPQH SVGNYNGAMN  240
GMVGEAYVGG SGIGSDLVKY YVPPQGLDDS KIVELAVVGM DELIRLDQTS GPPLWLPTNS  300
LNGEEYMLQF PTSNIGPNPM KLRHDGSKES AVVFINPISL VDIFMDVSQW SNMFCGIVSR  360
AATLNVLSTG VAGNYDGALQ VMSAEFQVAS PSIPTLENYF VRYCKLLPNS IWVVADIPLD  420
NFSPTSISRT KRRVSGCLIQ ELPNDYSNVT WIEHLEVEDN EVQTIYTPLI NSGLAFGAKR  480
WIAILQRQCE RLVYSMSNNI PITGSIGVRM TNAGKESMLR LAGRMVTSFC TSIGASTAHA  540
WTNLPSNGSE EVKVMTKKYI GESGSDISSD VVLSTATSFW LPIPPKRVFE FLRNESSRSQ  600
VCISTQTLVL SNWDILSTGC TVQDVAHIVN GCDPGNCVSL LRVCSENTGQ SNRVVLQESC  660
TDITGSYVVY APVDVIAMNL VLCGGDSNCV TMIPSGFAIL PDGGPIMDNG SGGSLITVGF  720
QIFVDSVPHT RLALGSVSTV NTLLKATVER IKVALMPK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8586
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511340.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A1S2YX400.0A0A1S2YX40_CICAR; homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
STRINGXP_004511340.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]