PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA8622

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 168aa MW: 18735.2 Da PI: 6.6539

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA8622	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.3	6.5e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+ Tp57577_TGAC_v2_mRNA8622 6 PCASCKLLRRRCAKDCAFAPYFPSHEPQKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQN 90 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q+++l+ +la++++e Tp57577_TGAC_v2_mRNA8622 91 QVSELQMQLAVAQAE 105 ********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.445	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MGGNSPCASC KLLRRRCAKD CAFAPYFPSH EPQKFAIVHK VFGASNVSKM LQELPIHQRA 60 DAVSSLVYEA NARVRDPVYG CVGAISYLQN QVSELQMQLA VAQAEILCIQ MQNEQVIPTQ 120 EINQDQKSYF IQDELTQYLN YGSSSSNNNV IHDSLKRDNM YGHDMVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-50	2	119	7	124	LOB family transfactor Ramosa2.1
5ly0_B	4e-50	2	119	7	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA8622

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR954198	1e-123	CR954198.2 Medicago truncatula chromosome 5 clone mte1-67f21, COMPLETE SEQUENCE.
GenBank	CU302335	1e-123	CU302335.1 Medicago truncatula chromosome 5 clone mth2-155g22, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003616690.1	1e-113	LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-73	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	G7K288	1e-112	G7K288_MEDTR; Lateral organ boundaries (LOB) domain protein
STRING	AES99648	1e-113	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-75	LBD family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA8622

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]