PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8623
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 306aa    MW: 35370 Da    PI: 6.8656
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8623genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.85.7e-281969151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krien   rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss
  Tp57577_TGAC_v2_mRNA8623 19 KRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 69
                              79***********************************************96 PP
2K-box60.28.4e-2115023020100
                     K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                                ++ Lk+ei +L+++q +llG+dL+ L lkeLq+Leqq++++l +++++K+ell+eq+e+++ +e+++  en++Lr+++ee
  Tp57577_TGAC_v2_mRNA8623 150 MVEILKDEIAKLETNQLRLLGKDLTGLGLKELQHLEQQINEGLLSVKERKEELLMEQLEQSRIQEQKAMLENETLRRQVEE 230
                               5778**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.4921171IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-421170IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-291180IPR002100Transcription factor, MADS-box
CDDcd002652.32E-3712114No hitNo description
PRINTSPR004043.6E-291333IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001367IPR002100Transcription factor, MADS-box
PfamPF003199.9E-262067IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-293348IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-294869IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.989144234IPR002487Transcription factor, K-box
PfamPF014865.4E-15151228IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
LGFLCFEKEE MGRGKIEIKR IENANSRQVT FSKRRTGLLK KAQELAILCD AEVAVIIFSN  60
TGKLFEFSSS GYVFEVFEFF DFIACLFYFV CEFCLLIMKR TLSRYNKCTD SSESASVEYK  120
TEILVIYSLI CCLILMSINK YFLQKDDTKM VEILKDEIAK LETNQLRLLG KDLTGLGLKE  180
LQHLEQQINE GLLSVKERKE ELLMEQLEQS RIQEQKAMLE NETLRRQVEE LRCLFPIAER  240
VMPTYLQYHH VERKNSFVDN SVKCPSFARN CANDKADSDT TLHLGLPTDV RNKKTPEKKK  300
ISNDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-171170160MEF2C
5f28_B1e-171170160MEF2C
5f28_C1e-171170160MEF2C
5f28_D1e-171170160MEF2C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8623
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004516227.11e-150agamous-like MADS-box protein AGL15
TrEMBLA0A1S2Z7431e-149A0A1S2Z743_CICAR; agamous-like MADS-box protein AGL15
STRINGXP_004516227.11e-150(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.13e-68AGAMOUS-like 15