PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA8657

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 253aa MW: 27331.1 Da PI: 4.5231

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA8657	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	122	143	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C+k F ++ H+++H Tp57577_TGAC_v2_mRNA8657 122 TCPVCKKEFATWRAAFGHMNKH 143 6*******************99 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048235	Biological Process	pollen sperm cell differentiation

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MNQNVSNNST STNNNPSPPN SPSHTPNEII IGEGFETIAK TSEEVLAAEL NAVNDETNEN 60 DTGGANEDGG AQGGVPRSMF VALIGDGSNT SMVEQVGGDN HVQPFKKRKY KLVRDPPIGI 120 PTCPVCKKEF ATWRAAFGHM NKHPDRPYRG FFPPPTFTPT ASVAGIHVED DCHPKEVDDE 180 GVLAVVRELI VDLNRSRSIE VPAKSSTAGG SGRNEEVPAL APKYEEGRRK NVFDLNELPP 240 NDDDDDDKIE EK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA8657

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3PR44	1e-144	A0A2K3PR44_TRIPR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10202	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35700.1	9e-10	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA8657