PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8709
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 133aa    MW: 15099.5 Da    PI: 10.2512
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8709genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.82.9e-291370155
                   G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelm...kvkgLtlehvkSHLQkYRl 55
                              k+rlrWt++LH+ Fveav++LGG+++AtPk il++m   ++  L+++hvkSHLQkYR+
  Tp57577_TGAC_v2_mRNA8709 13 KERLRWTQQLHDLFVEAVNRLGGPDRATPKGILKVMtamGISELSIYHVKSHLQKYRI 70
                              68****************************998876111677799************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-271171IPR009057Homeodomain-like
SuperFamilySSF466891.06E-151270IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-231371IPR006447Myb domain, plants
PfamPF002496.8E-81569IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MGSTRSDSSA THKERLRWTQ QLHDLFVEAV NRLGGPDRAT PKGILKVMTA MGISELSIYH  60
VKSHLQKYRI SKLIPESTTR GKIEKKSISD ILPNFCSISA LQLKEVLQMQ AEVQKRMDDR  120
VEVFYNVYSK SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-221372157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-221372157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-221372157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-221372157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8709
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449146.13e-77myb family transcription factor PHL7
SwissprotQ9SJW07e-38PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A2Z6M4W73e-83A0A2Z6M4W7_TRISU; Uncharacterized protein
STRINGXP_004514212.18e-76(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106592535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-40G2-like family protein