PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA8815
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 227aa    MW: 25317.4 Da    PI: 8.024
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA8815genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.18.8e-45791781100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrrkC+++C++apyfp +qp+kfanvh++FGasnv+kll++l++++reda++sl+yeAe+r+rdPvyG+vgvi+ lq+
  Tp57577_TGAC_v2_mRNA8815  79 PCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQH 163
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               ql+ql+ +l  +k+e
  Tp57577_TGAC_v2_mRNA8815 164 QLRQLQMDLYCAKSE 178
                               ********9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.94678179IPR004883Lateral organ boundaries, LOB
PfamPF031959.5E-4479175IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009799Biological Processspecification of symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009954Biological Processproximal/distal pattern formation
GO:0048441Biological Processpetal development
GO:0005654Cellular Componentnucleoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MWGKNESGPC LSPSVADHPL WPATDHRLDK LLPHQLANQT RAPPWEDSSS AYGKEKEKEK  60
ERKCVTLQQT TTMASSNSPC AACKFLRRKC QPECAFAPYF PPDQPQKFAN VHRIFGASNV  120
TKLLNDLHPH QREDAVNSLA YEAEMRLRDP VYGCVGVISL LQHQLRQLQM DLYCAKSELS  180
RYQNLSLAAT AGHGLITGLT GESVTATANY HHTXXXXXXX XXXXXX*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-55721824114LOB family transfactor Ramosa2.1
5ly0_B3e-55721824114LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00211DAPTransfer from AT1G65620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA8815
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1507701e-147KF150770.1 Medicago truncatula var. truncatula AS2 gene, promoter region.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445108.16e-87protein ASYMMETRIC LEAVES 2
TrEMBLA0A2Z6LPR69e-99A0A2Z6LPR6_TRISU; Uncharacterized protein
STRINGXP_004511083.13e-83(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96253043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.41e-65LBD family protein