PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA899
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 195aa    MW: 21595.8 Da    PI: 10.5561
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA899genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.41.1e-195689134
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                             Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Tp57577_TGAC_v2_mRNA899 56 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 89
                             *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.7565086IPR000679Zinc finger, GATA-type
SMARTSM004016.2E-2050101IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.94E-135190No hitNo description
Gene3DG3DSA:3.30.50.105.3E-165490IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.06E-135585No hitNo description
PROSITE patternPS0034405681IPR000679Zinc finger, GATA-type
PfamPF003202.1E-175689IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSSKMRMMRK MIDSDQTSGG SSNIASNSKQ KFEDPKQPLS PLGSSTNNYS NQIRVCSDCN  60
TTKTPLWRSG PRGPKSLCNA CGIRQRKARR AMALAAASAN GTTVTADQTC SVKRKKLQKK  120
KENKSKIDYC STHLKKKTKF ESEPSHQTKK EFITFEDLRL SLSKNLSVQQ VFPQDEKEEA  180
AILLMALSYG LVHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA899
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458498.22e-79putative GATA transcription factor 22
TrEMBLA0A2K3N0S41e-140A0A2K3N0S4_TRIPR; GATA transcription factor 22-like protein
STRINGGLYMA15G18380.12e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-31cytokinin-responsive gata factor 1