PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9011
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 239aa    MW: 27948.6 Da    PI: 8.4756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9011genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-172067148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Tp57577_TGAC_v2_mRNA9011 20 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 67
                              79********************************************97 PP
2Myb_DNA-binding46.86.7e-1573139146
                               TSSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwqk 46 
                               rg+ T+eE++l+ ++++++G+                       +W++Ia++++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA9011  73 RGNITPEEQLLIMELHAKWGNSqarkllfqlyvivflyklfhhcRWSKIAKHLP-GRTDNEIKNFWRT 139
                               7999*****************9********************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-241370IPR009057Homeodomain-like
PROSITE profilePS5129423.4261571IPR017930Myb domain
SMARTSM007177.2E-131969IPR001005SANT/Myb domain
SuperFamilySSF466891.24E-222071IPR009057Homeodomain-like
PfamPF002493.3E-162067IPR001005SANT/Myb domain
CDDcd001676.99E-102267No hitNo description
Gene3DG3DSA:1.10.10.608.5E-2271145IPR009057Homeodomain-like
SMARTSM007171.0E-1072143IPR001005SANT/Myb domain
PROSITE profilePS5129411.3372145IPR017930Myb domain
PfamPF002493.2E-1373139IPR001005SANT/Myb domain
CDDcd001673.94E-877139No hitNo description
SuperFamilySSF466891.24E-22111140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MQKIMDKKPC NSSQDPEVRK GPWTMEEDLI LINYIANHGE GVWNSLAKAA GLKRTGKSCR  60
LRWLNYLRPD VRRGNITPEE QLLIMELHAK WGNSQARKLL FQLYVIVFLY KLFHHCRWSK  120
IAKHLPGRTD NEIKNFWRTR IQKHIKQVDN PNQQNYQPQM SLDINDHHHS SSSQVSNIVE  180
PMETYSPTSY HQQGTLEPFP TQFPIINDHQ SSCCTNDNNT NNYWSMEDIW SMQLLNGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-211514522128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY111051e-131Y11105.1 P.sativum mRNA for Myb-like protein (Myb26).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450781.11e-123myb-related protein 305
SwissprotP813911e-88MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A072U6351e-121A0A072U635_MEDTR; Myb transcription factor
STRINGXP_004489258.11e-122(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-83myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]