PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9031
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 352aa    MW: 40361.4 Da    PI: 7.3414
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9031genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31016.8e-3292197199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+k ltpsdv+k++rlv+pk++ae++       ++ + ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD
  Tp57577_TGAC_v2_mRNA9031  92 FEKPLTPSDVGKLNRLVIPKQYAEKYfplggvsDSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGD 176
                               99***************************9987666668899******************************************* PP

                               EEEEEE-SS.SEE..EEEEE-S CS
                        B3  79 fvvFkldgr.sefelvvkvfrk 99 
                               +v+F+++ r ++++l++ ++r+
  Tp57577_TGAC_v2_mRNA9031 177 VVLFERH-RfDSQRLFINWRRR 197
                               *****75.559999*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4084198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-3287196IPR015300DNA-binding pseudobarrel domain
CDDcd100175.05E-3090188No hitNo description
PROSITE profilePS5086314.43892198IPR003340B3 DNA binding domain
SMARTSM010194.1E-2592198IPR003340B3 DNA binding domain
PfamPF023627.1E-2992197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDLPETSLWW TQQQQQQQHQ QQQTMILLEP IQNTSWSLHH HQPTWYNSQI HENMTPHFNH  60
VNMEDEEIPN NNNSTTMTGG EIKSEDQKEP MFEKPLTPSD VGKLNRLVIP KQYAEKYFPL  120
GGVSDSAECK GLLLSFEDES GKCWRFRYSY WNSSQSYVLT KGWSRYVKDK RLDAGDVVLF  180
ERHRFDSQRL FINWRRRRLS GEEQSAAYVS RAVVGGNGGG NSKNEVVSGV GVGWSRGFYS  240
AHVPYPAHHQ VLPYQHDHCL HAGRGSQSQN QRTKPLGNSS SSSSSSRVLR LFGVNMECQP  300
EHDSSTPQCS YDSNNMPLTQ STLDNNSPNL YQPNSSHNSN HHMLRHQPYY Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-47881974113B3 domain-containing transcription factor NGA1
5os9_B1e-47881974113B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198WRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9031
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1389032e-38BT138903.1 Medicago truncatula clone JCVI-FLMt-4I21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634118.11e-174B3 domain-containing protein At5g06250
SwissprotQ9FNI34e-63Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2K3P8D61e-176A0A2K3P8D6_TRIPR; B3 domain-containing protein
STRINGXP_004513583.11e-143(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.18e-61B3 family protein