PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9102
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 406aa    MW: 47116.5 Da    PI: 8.0333
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9102genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.51e-52191771129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k...............................kvka 53 
                               lppGfrFhPtdeel+++yL +kv ++ + +  +i e+d++k+ePwdLp k                               ++k 
  Tp57577_TGAC_v2_mRNA9102  19 LPPGFRFHPTDEELITHYLSQKVLDNCFCA-IAIGEADLNKCEPWDLPcKslfpllifhiyfsskvfasrfktdmqtryngRAKM 102
                               79************************9888.78***************6589*******************99999988876677 PP

                       NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++l+g+kktLvfykgrapkgekt+Wvmheyrle
  Tp57577_TGAC_v2_mRNA9102 103 GEKEWYFFCMRDRKYPTGLRTNRATNAGYWKATGKDKEIYR-EKTLIGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 177
                               999**************************************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-521667IPR003441NAC domain
PROSITE profilePS5100551.68119224IPR003441NAC domain
PfamPF023651.7E-2920176IPR003441NAC domain
SuperFamilySSF1019413.01E-5296224IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDAMEKNSRY VKSDKKIELP PGFRFHPTDE ELITHYLSQK VLDNCFCAIA IGEADLNKCE  60
PWDLPCKSLF PLLIFHIYFS SKVFASRFKT DMQTRYNGRA KMGEKEWYFF CMRDRKYPTG  120
LRTNRATNAG YWKATGKDKE IYREKTLIGM KKTLVFYKGR APKGEKTNWV MHEYRLEDTY  180
TLQTISKKAM VNLVFFFIYF FLIFLNFVIV CFQKEWSICR VFEKGYCGKK MHIQDLVSFN  240
SIGKEQLPQL MDSPPYNSET KNTIGDSSHV TCLSDPNLID YNQRTQDNDN NIVYETPMLA  300
SSYSSNPSYG NSISPTSWAP TLSHKSKQIG NSHSSDCFIV QEQSMLNENN GTSTKTKNKK  360
AQECDFDVDI SSMMYNNEIF QRPYVSEEYS SDSIGHFESG YLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-451617617145NAC domain-containing protein 19
3swm_B5e-451617617145NAC domain-containing protein 19
3swm_C5e-451617617145NAC domain-containing protein 19
3swm_D5e-451617617145NAC domain-containing protein 19
3swp_A5e-451617617145NAC domain-containing protein 19
3swp_B5e-451617617145NAC domain-containing protein 19
3swp_C5e-451617617145NAC domain-containing protein 19
3swp_D5e-451617617145NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9102
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1227241e-113AC122724.36 Medicago truncatula chromosome 6 clone mth2-14m14, complete sequence.
GenBankAC1484851e-113AC148485.10 Medicago truncatula chromosome 6 clone mth2-46j5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618528.21e-179NAC domain-containing protein 92
TrEMBLG7KKX51e-178G7KKX5_MEDTR; NAC transcription factor-like protein
STRINGAES747461e-179(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-92NAC domain containing protein 100