PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA9105

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 494aa MW: 53670.1 Da PI: 4.6937

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA9105	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127	5.7e-40	133	193	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk+ss Tp57577_TGAC_v2_mRNA9105 133 PDKILPCPRCHSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKSSS 193 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	130	190	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-32	135	191	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	137	191	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	139	175	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MLEAKDPAIK LFGKTIPVPE ISSGSGDSTG APASSSGDAV DDGIAQNHAS SLNSSNTNMD 60 EEDREIDQDT MEEELSKCKK EKDETLAQSS QKKTDLDTAS RLVEESINPS TEEEQKSNEE 120 QAENAQDKTL KKPDKILPCP RCHSMDTKFC YYNNYNVNQP RHFCKNCQRY WTAGGAMRNV 180 PVGAGRRKNK SSSSHYRQIT IPDVIAVQNS QSDSPNGIHP PPLNCNGTVF TFGTGSPLCE 240 SIESALNIVD KGVNTCTNNG FIRPENLRIH VPYAGEENSN ESPDASTTPA EDATVNNSLE 300 QAMPNCQSFP PQVPYYPGAP WLLPWNPSQW SSQVQPPPAF FPQGFAMPVY PPPAYWGFTV 360 PGAWNNPWLA QPSSPSSAAV NSGPNSPTLG KHSREESTLK LNEAAGSDEG NNKEEKSLWV 420 PKTLRIDDLG EAEKSSILTT LGINNNKTDL IRGGGLFKAF ASKDDEKDGM QNSPVMQANP 480 AAMSRSINFH ETS*

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MLEAKDPAIK LFGKTIPVPE ISSGSGDSTG APASSSGDAV DDGIAQNHAS SLNSSNTNMD  60
EEDREIDQDT MEEELSKCKK EKDETLAQSS QKKTDLDTAS RLVEESINPS TEEEQKSNEE  120
QAENAQDKTL KKPDKILPCP RCHSMDTKFC YYNNYNVNQP RHFCKNCQRY WTAGGAMRNV  180
PVGAGRRKNK SSSSHYRQIT IPDVIAVQNS QSDSPNGIHP PPLNCNGTVF TFGTGSPLCE  240
SIESALNIVD KGVNTCTNNG FIRPENLRIH VPYAGEENSN ESPDASTTPA EDATVNNSLE  300
QAMPNCQSFP PQVPYYPGAP WLLPWNPSQW SSQVQPPPAF FPQGFAMPVY PPPAYWGFTV  360
PGAWNNPWLA QPSSPSSAAV NSGPNSPTLG KHSREESTLK LNEAAGSDEG NNKEEKSLWV  420
PKTLRIDDLG EAEKSSILTT LGINNNKTDL IRGGGLFKAF ASKDDEKDGM QNSPVMQANP  480
AAMSRSINFH ETS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA9105

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003618507.1	0.0	cyclic dof factor 2
TrEMBL	A0A2Z6NXC5	0.0	A0A2Z6NXC5_TRISU; Uncharacterized protein
STRING	AES74725	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-95	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA9105