PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA9177

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 279aa MW: 30984.9 Da PI: 8.5757

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA9177	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.7e-39	36	97	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+a++cprC+s ntkfCyynnysl+qPryfCk+CrryWt+GG++rn+PvGgg+rknk+sss Tp57577_TGAC_v2_mRNA9177 36 KEQAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSIRNIPVGGGSRKNKRSSS 97 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	28	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	38	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.64	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MIYLYLIILH ILKEIMVKPI VTTNHHVLEK KPKPQKEQAI NCPRCNSINT KFCYYNNYSL 60 TQPRYFCKTC RRYWTQGGSI RNIPVGGGSR KNKRSSSFSN SSISTKNQHA HEFVDVTLTP 120 QNKIHHEDQG QDLNLSFPSI TLRSSELVQQ NNNNTSTSNQ FSAMELLTGI GGFTSRGLQH 180 PFMPVQLQGG FSMQDFKQVP MSFCLHGING GSGFASGVQE ISEGKVLFPF EDLKQVSSTN 240 DNLTLGFDEN NIKEDQQGYS TGIWTEMLGG GGGGGSWS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA9177

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB087852	1e-51	AB087852.1 Pisum sativum PsDof7 mRNA for DNA binding with one finger 7 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013468849.1	2e-95	dof zinc finger protein DOF4.6
TrEMBL	A0A072VMR5	4e-94	A0A072VMR5_MEDTR; Dof-type zinc finger DNA-binding family protein
TrEMBL	A0A072VXW2	4e-94	A0A072VXW2_MEDTR; Dof-type zinc finger DNA-binding family protein
STRING	XP_004495498.1	3e-83	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	5e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA9177