PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA922

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 253aa MW: 29462.1 Da PI: 7.0659

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA922	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.7	2.9e-26	75	165	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtklele 84 +fYn+Y++++GF+vr++++++s+ n+e++ ++fvCskeg+r+++ +++++ + + tr gC+a++++++++ gkw+v+k+++e Tp57577_TGAC_v2_mRNA922 75 EFYNAYGRRIGFTVRVHHNRRSRINKEVIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPPTREGCQAMVRMTLTDGGKWVVAKFVKE 159 6****************************************99883333.2448899*********************** PP FAR1 85 HnHela 90 H+H+l+ Tp57577_TGAC_v2_mRNA922 160 HTHKLM 165 **97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-23	75	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MMDHQSGQGF DSYGSDPNVI AETSEKHDKV DVDISNNLEL CAGEDERFVE QPVADSDTIE 60 PFIGMEFNSR EEAREFYNAY GRRIGFTVRV HHNRRSRINK EVIGQDFVCS KEGFRAKKYV 120 HRKDRVLPPP PPTREGCQAM VRMTLTDGGK WVVAKFVKEH THKLMSPSEV PWRRSEKHLI 180 SEDEKDRRIR ALSLELYNER QKYKRRCAAY EEQINMILND VERHTEHISK KVADVVRNIR 240 EIEEEKSESN GR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA922

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146574	1e-171	AC146574.6 Medicago truncatula clone mth2-145j21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003597516.1	1e-158	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024632575.1	1e-158	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K3MVY2	0.0	A0A2K3MVY2_TRIPR; FAR1-related protein
STRING	AES67767	1e-157	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	8e-42	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA922