PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9232
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 188aa    MW: 21893.8 Da    PI: 4.9679
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9232genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.61.1e-14118181267
                      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 
                               fY++YA++ GF +rk +  k+  ng i +r+f C++eg+ + +  + +ke+r+r+ +r++Cka+l+
  Tp57577_TGAC_v2_mRNA9232 118 FYKRYAYQHGFAIRKGRFVKQ--NGIISRRDFFCYREGSVSLKIIDPSKEQRKRELSRCECKAHLR 181
                               9***************98877..**********************99****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-12118180IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
VLKYTFYLLF LFVDDKQHNV MDSVNVIDMN FDLNECPIED ISHENGNSAI IVEHFDHAIV  60
ANDVLEVDDI GSFEKENLAP YSENIQVNQF LEEVDKDGQN IIPFVGQIFL TEEEAFAFYK  120
RYAYQHGFAI RKGRFVKQNG IISRRDFFCY REGSVSLKII DPSKEQRKRE LSRCECKAHL  180
RKFYLSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9232
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014622071.14e-71protein FAR1-RELATED SEQUENCE 11-like isoform X4
TrEMBLA0A445H0B12e-69A0A445H0B1_GLYSO; Protein FAR1-RELATED SEQUENCE 11 (Fragment)
TrEMBLA0A445JH673e-69A0A445JH67_GLYSO; Protein FAR1-RELATED SEQUENCE 11 (Fragment)
STRINGAES623831e-51(Medicago truncatula)
STRINGAES746014e-52(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1516549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.12e-20FAR1-related sequence 11