PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9378
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 282aa    MW: 32811.9 Da    PI: 6.0467
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9378genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.8e-131461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT eEd +l   +   G ++W+ +++  g+ R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA9378 14 RGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                              89******************************99************97 PP
2Myb_DNA-binding50.64.4e-1667118146
                               TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqk 46 
                               rg +T+ E+++++++++ lG++       +W++Ia++++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA9378  67 RGDFTEMEEDQIIQLHACLGNRynishfcRWSKIASHFP-GRTDNEIKNHWNT 118
                               899************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.414961IPR017930Myb domain
SuperFamilySSF466894.49E-2511116IPR009057Homeodomain-like
SMARTSM007171.1E-51363IPR001005SANT/Myb domain
PfamPF002499.5E-111461IPR001005SANT/Myb domain
CDDcd001678.30E-41661No hitNo description
PROSITE profilePS5129420.59562124IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2365125IPR009057Homeodomain-like
SMARTSM007174.3E-1166122IPR001005SANT/Myb domain
PfamPF002493.1E-1467118IPR001005SANT/Myb domain
CDDcd001671.09E-870118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMSFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGDF TEMEEDQIIQ LHACLGNRYN ISHFCRWSKI ASHFPGRTDN EIKNHWNTRI  120
KKKLKFLGLD PVNHKPIEQK QQTDDDQKDK TNQQLNIPQE VEENVENIKS LENDVTKEMT  180
KTEWKKEENK VTWDDSDELL NNFEILCSNL DLGTWMNQCT NTSTNSVSSS SISFDDTSHI  240
SIDESSYLQQ NSLQHWVDSM DSLLSWDGFN PLDQNISFFG K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25121245108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9378
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548543.11e-152myb-related protein 315
RefseqXP_028206935.11e-152myb-related protein 315-like
SwissprotP813941e-78MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A2K3LBE91e-162A0A2K3LBE9_TRIPR; Protein ODORANT1-like
STRINGGLYMA16G06900.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-78myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]