PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9497
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 439aa    MW: 47270.2 Da    PI: 7.7315
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9497genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.6e-10114134526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                C ++ + GtC+yGdrCkF H+
  Tp57577_TGAC_v2_mRNA9497 114 VCTYWIQ-GTCSYGDRCKFLHS 134
                               7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0122348IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.152349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023110136IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5111135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-7112134IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-7113134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-8113132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.104.6E-17133249IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.01E-48134188IPR017986WD40-repeat-containing domain
SMARTSM003205.4E-4140179IPR001680WD40 repeat
PfamPF004000.019143179IPR001680WD40 repeat
PROSITE profilePS5008213.215147188IPR001680WD40 repeat
PROSITE profilePS5029420.54147349IPR017986WD40-repeat-containing domain
PRINTSPR003202.6E-6166180IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780166180IPR019775WD40 repeat, conserved site
SMARTSM003204.2219256IPR001680WD40 repeat
SuperFamilySSF509782.01E-48226430IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.8E-32250428IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.2E-4263300IPR001680WD40 repeat
PfamPF004000.0018267300IPR001680WD40 repeat
PROSITE profilePS5008213.182270309IPR001680WD40 repeat
PROSITE patternPS006780287301IPR019775WD40 repeat, conserved site
PRINTSPR003202.6E-6287301IPR020472G-protein beta WD-40 repeat
SMARTSM003203.2E-4303340IPR001680WD40 repeat
PfamPF004000.0014305339IPR001680WD40 repeat
PRINTSPR003202.6E-6327341IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9344387IPR001680WD40 repeat
SMARTSM003206.3390427IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDFDGGNKRV YNRLGGSTGG GDSRNQKVCF QWQAGKCNRY PCPFLHSELP TSNGNGAPSK  60
RPYADNNSGF SGNRRGGGSS FNTWGPGRGG GRGRGGGRGA VGGGGRGVVN VEKVCTYWIQ  120
GTCSYGDRCK FLHSWSLGDG FSLLTQLEGH KKVVSGIAMP SGSDKLYTGS TDETVRAWDC  180
QSGQCIAVIN LGGEVGCMIS EGPWLFVGIP NFVKAWNTQN STEISLDGPV GQVYALVVIN  240
DMLFAGTQDG AILLWRFNVA ANCFEPAASL KGHTRGVVSL VVGANRLYSG SMDNTIRVWN  300
IETLQCLQTL TEHTSVVMSV LCWDQFLISC SLDKTVKVWF ATETGNLEVT YTHPEEHGIL  360
TLCGMHDSHG KPILMCSCND NTVRLYDLPS FAERGKIFNK QEVRAIQTGP GSIFFTGDGT  420
GQVRVWNWIP EPAANSTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-191354275320Tako8
6g6n_A1e-191354275320Tako8
6g6n_B1e-191354275320Tako8
6g6n_C1e-191354275320Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103GGRGAVGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9497
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096404e-34AP009640.1 Lotus japonicus genomic DNA, clone: LjB22H06, BM1971, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452551.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2K3MS860.0A0A2K3MS86_TRIPR; Zinc finger CCCH domain-containing protein 48-like
STRINGXP_004513686.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1