PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9557
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 357aa    MW: 40790.2 Da    PI: 7.0489
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9557genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.61.4e-221053245
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              + e++snr+vt+skR+ gilKKA+ELS+LCd+++++++fs+t k
  Tp57577_TGAC_v2_mRNA9557 10 KLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTEK 53
                              679**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.6E-28160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.478153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-24295IPR002100Transcription factor, MADS-box
CDDcd002663.41E-26284No hitNo description
PRINTSPR004046.7E-16323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-191154IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRVKLKIKK LESTSNRHVT YSKRKSGILK KAKELSILCD IDILLLMFSP TEKPTLLQGE  60
RSNIEEIISK FAQLSPQERA KRKMESLEAL KKTFKKLDHD VKIQDFLGSS SQTMEELSHQ  120
VRVLQAQLAE TQQRLSYWSN LEKINNLEHL RQMEDSLRES VNRLCIQKEN LRKRQLMSLD  180
CANQLPEGMT LPLMMAGLQE SQPLSWLLSG DNHQLMLPNE PKFMPFSDNG NRDVECSTDI  240
SLPGYSGYIG NGKLEVGSSP HVNTLGQGGS SLNELNGNPN PYLNVQQCDQ FAYPPPQDLE  300
EVKHHQTMNS KSNTMDYQVN NNYELPRSLF ENEHQQFWNS TNGSCGIAMY NENGYHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-14192190MEF2 CHIMERA
6byy_B9e-14192190MEF2 CHIMERA
6byy_C9e-14192190MEF2 CHIMERA
6byy_D9e-14192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9557
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0532120.0BT053212.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-G-19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457907.10.0agamous-like MADS-box protein AGL65 isoform X1
RefseqXP_024637091.10.0agamous-like MADS-box protein AGL65 isoform X1
SwissprotQ7X9I05e-96AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A072USA50.0A0A072USA5_MEDTR; MADS-box transcription factor family protein
STRINGGLYMA17G10941.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-87AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]