PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA9575

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Nin-like

Protein Properties

Length: 165aa MW: 19577.8 Da PI: 6.5439

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA9575	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.1	1.3e-26	44	94	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++s +++s+yF++pi +AAkeL+++lT+LK++CR++GI RWPhRk++sl Tp57577_TGAC_v2_mRNA9575 44 TKSLSRDTISQYFYMPISQAAKELNIGLTLLKKRCRELGIGRWPHRKLTSL 94 799*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.894	28	115	IPR003035	RWP-RK domain
Pfam	PF02042	9.6E-22	47	94	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MFDILFDSEK EHLCCTDIEI KKEVVEFKPE VEERKKITIS GEDTKSLSRD TISQYFYMPI 60 SQAAKELNIG LTLLKKRCRE LGIGRWPHRK LTSLQTLINN VQELREEEEP LSDEKLMNVI 120 EMLEKEKKLV EEMPDMELDY RTKRLRQACF KANYKKRKLM EQVF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA9575

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028753648.1	7e-59	protein RKD2
Swissprot	Q9M9U9	2e-48	RKD1_ARATH; Protein RKD1
TrEMBL	A0A2K3L3Q8	1e-112	A0A2K3L3Q8_TRIPR; Protein RKD1
STRING	GLYMA05G01030.2	5e-58	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	8e-40	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA9575