PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA9644

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 158aa MW: 18482.7 Da PI: 10.88

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA9644	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.8	2.1e-12	59	118	3	62
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e+++ rr+++NRe+ArrsR RK+ +e+L++ v + aeN++L ++l+ + + +l++e Tp57577_TGAC_v2_mRNA9644 59 EDRKRRRMISNRESARRSRMRKQRHLENLRNQVNRFRAENQELNNTLQFIVYHFNRLRTE 118 57899**************************************99998766666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.6E-14	57	121	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-10	59	119	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.829	59	122	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-9	59	123	No hit	No description
SuperFamily	SSF57959	4.02E-11	61	110	No hit	No description
CDD	cd14702	5.94E-18	62	106	No hit	No description
PROSITE pattern	PS00036	0	64	79	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MLSSLSNSDF TVLDEDVTPW NFPNIFSPFN PTSPKPTSSS GSGEPNEKPV LNDSNRNIED 60 RKRRRMISNR ESARRSRMRK QRHLENLRNQ VNRFRAENQE LNNTLQFIVY HFNRLRTENE 120 WLRLERTMLG QKLSNISQNL VFQPFSSAWP CNIVTAE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	64	RKRRR
2	73	80	RRSRMRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA9644

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004511808.2	4e-77	bZIP transcription factor RISBZ3-like
TrEMBL	G7K2E8	1e-91	G7K2E8_MEDTR; BZIP transcription factor
STRING	AES94499	2e-92	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5435	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	5e-23	basic leucine-zipper 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA9644