PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9869
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 234aa    MW: 26655.9 Da    PI: 10.2376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9869genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.52.1e-12136223290
                               EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               + +l ++++  +++l l k+fae + g k  +k + ++ ++ +    kl + ++++g++ +++GWk+F+ a g k+gD+++F+ +
  Tp57577_TGAC_v2_mRNA9869 136 VVTL-TKYTALKSQLPLKKEFAEFMRGCK-HHKSIYFMGRTANFVPCKLLIgEGYKGSVKFGAGWKRFCAASGYKAGDVLTFECK 218
                               4455.555666667********8884443.5568***************7779******************************77 PP

                               SSSEE CS
                        B3  86 grsef 90 
                               + ++ 
  Tp57577_TGAC_v2_mRNA9869 219 DAKGS 223
                               65554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-424114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-12127221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-11130224IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.783134232IPR003340B3 DNA binding domain
PfamPF023621.0E-8136224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MCPGRRFFGN VWNSSMFKDV KGGFATVTMN FMERYAEVDP KFVEEFKEEL GGIWRLKDEC  60
GNRHIVKFNN SVTTPDIFEG MTELRQFYGL TGSHLLLFGY KGNNKFRLTV FKKEVDEFSF  120
PAFHSQSNKP KSKKFVVTLT KYTALKSQLP LKKEFAEFMR GCKHHKSIYF MGRTANFVPC  180
KLLIGEGYKG SVKFGAGWKR FCAASGYKAG DVLTFECKDA KGSRIMFVTK TSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9869
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z6NF921e-125A0A2Z6NF92_TRISU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31615.13e-06B3 family protein