PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9953
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family E2F/DP
Protein Properties Length: 1900aa    MW: 217678 Da    PI: 7.6122
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9953genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.25e-2284165371
                   E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwk 70 
                               + +L ++t+k   ++ek e+ g++t+neva+eLv+e                d+kn+rRR YD+lNVL+a+++i+k +++ei+wk
  Tp57577_TGAC_v2_mRNA9953  84 GMGLPQVTMK---VFEKIESkGKTTFNEVADELVAElsdpmnsvlspekqqyDEKNIRRRTYDVLNVLMAVDIISK-DRKEIQWK 164
                               6799999999...****9999*******************************************************.*******9 PP

                   E2F_TDP  71 g 71 
                               g
  Tp57577_TGAC_v2_mRNA9953 165 G 165
                               8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-3579169IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-2582165IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.9E-1985165IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.16E-1786166IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011389.2E-47170326IPR014889Transcription factor DP, C-terminal
CDDcd144584.74E-34172276IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.14E-33172289No hitNo description
PfamPF087815.1E-32172281IPR014889Transcription factor DP, C-terminal
PfamPF142145.6E-63781963IPR025476Helitron helicase-like domain
SuperFamilySSF525408.04E-2213141367IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.1E-614061612IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525408.04E-2214131605IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF059707.0E-14514171780IPR010285DNA helicase Pif1-like
SuperFamilySSF525406.11E-4115531634IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3009.1E-2616131707IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525406.11E-4116801712IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525406.11E-4117461897IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3009.1E-2618161869IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF026899.1E-518251873IPR003840DNA helicase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003678Molecular FunctionDNA helicase activity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1900 aa     Download sequence    Send to blast
MRTQLQQLCV DKKEQELEVC GTEISGQSGS SSRSEQTTGI ATGDNAGFEV NHLDIHDNDA  60
GSRVVSNKKK KCQQRVSDGG DTSGMGLPQV TMKVFEKIES KGKTTFNEVA DELVAELSDP  120
MNSVLSPEKQ QYDEKNIRRR TYDVLNVLMA VDIISKDRKE IQWKGLPSPS PIEELKTERL  180
EIRNRIESKA SYLQELEEQF VGLKNLVQRN EQLYRSENPP SGGLSLPFVL VQTPPHATVE  240
LEVEISEDNQ DMQLVHFDFN SAPFQLYDDN YVLKSMEFCD RPRSDIVMLT EEGEVSSLSG  300
LNQLQVPPSV PGILENNTME SNKRRRCGSS LTLSGITNVT SSSLHSQVSS KNVFRKPLHI  360
GPGKYVLKRP RSPHRIDESS QMNFDKSNNK EIYVECNENG EEYDVPDNNS VSSENVFRKP  420
LHIGPGKYVL KRPRSPHRRD ETSLMNFDIS NNKEIYVECN ENGEEYDVPD NHSFFGYIPD  480
NHSVQVVTSQ YWDIGEPTCI CEYCGAMMWS EERLRKLSKA KNPKFNMCCF QGRIVIPHYH  540
PLPQPLNDLF HKHDKRSKYF LDNIRSFNSM FAFTSMGGKL NKSLNDGNAT PTFLMNGENY  600
HQIGSLLPHP GIQPKFAQLY IYDTENEISN RMSVVSMKDN SSSLKATIVD DIKKVLDNHN  660
PYAQTYRMIR DKICENDVPT LKLRILGKRG RDGRRYNLPT TSEVAALIVG DFDAADFERD  720
IILETQSGLL KRISAFEPAY LPLQYPMLFP RGEDGFRKDI QYNDDSNAPT IKRRTITLRE  780
WFAYRIQQRI TEQSTLLFSR RLFHQFLVDA YSMIESSRLK WIRNHQKDLR VEMYKGLTEA  840
ILRGEITPST AGKRIVLPSS FTGGARYMIQ NYQDAMTICG WAGHPDLFIT FTCNHKWPEL  900
CGFLSKYKLK SKDRPDLVCR LFKIKLDHLI KEIKEGEIFG KVKAVIYTIE FQKRGLPHAH  960
ILVFLHPGSR HVHPQDIDRI ICAEIPDKHS DPKLFNIVSA LMIHSPCGDQ NKNSPCMHNG  1020
KCTKYFPKRF VDNTIIDADG YPVYRRRDNG VFIRKGEFLV DNRFVVPYNR HLLLKYNSHI  1080
NVEWCNQSRS LKYLFKFVNK GHDRVTAGFY NNDSKYDDEI KLYYDCRYLS SYEAVWRIFT  1140
FDINYKKPSV ERLTFHLPGE QPVVFDDVDP INEVVNKPFI HNTKFLAWMD ANKKYEEAKN  1200
LTYNQFPLKF VWKDSERQWY PRKKGHKIGR LHFVPPGIGE IYYLRTLLNY VKGPRSFAEI  1260
RTVNNVHYPT FKEACYAMSL LDDDKEYIDA IMEASHWGTG SNLRELFANY LLSNQFSRPE  1320
FVWNETWEYL TDDILSTQRM LLQLQDLVLS PTELKIFALS EIEKLLQSNH KSLSDFPTMP  1380
QPDLSMITAR ENRLIYDELN YDRHSLVEEY TRLMSTMTSE QRRIYDKIMT RVTENKPGLF  1440
FLYGYGGTGK TYIWRAMSAA LRSKGDIVLT VASSGIAALL IPGGSTAHSR FSIPIQVDEN  1500
STCNIKQGSP IAELIVKAKL IIWDEAPMAH KHCFEAVDRT FRDILRFCDS RNINLPFGGK  1560
VVVLGGDFRQ ILPVIPKGTR QEVVHATINS SYLWDFCEVM TLHTNMRLLT DSLDSDFQQR  1620
KEFSDWILGI GDGNVGEDND VDISVQIPDD LLIKSAGDSL TSIVYSTYPS FLDNMNDLSF  1680
FQDRAILAPK NDIVDKINDY MLGLIPGDRK TYLSFDSAYS PNSDVDNPDN VHTTEFFNTI  1740
NGFGLPNHIV KLKVGVPVML LRNINHSSGL CNGTRLIITR MGKYVLEGKV ISGSNLGHKV  1800
YIPRLSLTPA DVRIPFKFQR KQFPLTLSFA MTINKSQGQS LKHVGLYLSC SVFSHGQLYV  1860
ALSRVTSRKG LKILAIDDES QDTNMTANVV YKEIFQKLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-2777171294PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9953
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625718.10.0uncharacterized protein LOC112416362
TrEMBLA0A2K3NLS30.0A0A2K3NLS3_TRIPR; ATP-dependent DNA helicase
STRINGAES822430.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-97Transcription factor DP