PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA996

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

G2-like

Protein Properties

Length: 134aa MW: 14448.2 Da PI: 9.5335

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA996	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	111.7	3.5e-35	68	122	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ Tp57577_TGAC_v2_mRNA996 68 KPRMRWTPELHEAFVEAVTQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 122 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.197	65	125	IPR017930	Myb domain
SuperFamily	SSF46689	5.29E-19	66	122	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-33	67	124	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.1E-26	68	122	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-10	70	121	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
LTSNWNDLLA DNIQDLEPKV KAADPISKSS SQFSAGHQSQ GHQQLPALSG ENNVGVAPSS 60 SANSAPAKPR MRWTPELHEA FVEAVTQLGG SERATPKGVL KLMKVEGLTI YHVKSHLQKY 120 RTARYRPESS EGT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-35	67	126	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-35	67	126	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-35	67	126	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-35	67	126	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-35	67	126	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-35	67	126	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-35	67	126	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-35	67	126	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250\|UniProtKB:Q10LZ1}.
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:18263782, PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:18263782, ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA996

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by Pi starvation. {ECO:0000269\|PubMed:18263782, ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT135486	1e-165	BT135486.1 Medicago truncatula clone JCVI-FLMt-21A2 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003625354.1	6e-79	protein PHOSPHATE STARVATION RESPONSE 1
Swissprot	B8ANX9	1e-38	PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1
Swissprot	Q10LZ1	1e-38	PHR1_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 1
TrEMBL	A0A2K3PRD4	3e-90	A0A2K3PRD4_TRIPR; Two-component response regulator ARR (Fragment)
STRING	AES81572	2e-78	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1512	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	2e-38	phosphate starvation response 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA996

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]