PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g00030
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 251aa    MW: 28850 Da    PI: 7.7062
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g00030genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06326226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               k+ lC+ f+  G C  Gd+C F+H+
  Tp5g00030  3 KRILCK-FFVHGACLKGDNCEFSHD 26
               889***.7777*************5 PP
2zf-CCCH26.51.1e-083454526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
               +C ++ r G+C+yG+rC++ H+
  Tp5g00030 34 ICTYYKR-GICSYGSRCRYEHV 54
               7998888.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.981128IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-8326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5772956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-43155IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-63454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-53453IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.44E-1388163No hitNo description
Gene3DG3DSA:3.30.40.104.2E-1091158IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.30E-498158No hitNo description
SMARTSM001845.5E-799156IPR001841Zinc finger, RING-type
PfamPF000972.2E-799156IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.34299157IPR001841Zinc finger, RING-type
PROSITE patternPS005180123132IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.103186215IPR000571Zinc finger, CCCH-type
SMARTSM003560.54186214IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSKRILCKFF VHGACLKGDN CEFSHDWKDP TSNICTYYKR GICSYGSRCR YEHVKASRPH  60
PSASSSSLSD PQEREEHKKV CEKKQKQVEA LKLSQEIECC VCLERVLSKP TPAERKFGLL  120
TECDHAFCIA CIRNWRSSSP STGMDVNSTL RACPICRKLS YFVVPSVIWF SAPEEKKEIM  180
ENYREKLRSI DCKHFNFGDG NCPFGTSCFY KHAFHDGRLE EVVLRHLDAE DGETVIAKDI  240
RLSDFLEDMH I
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g00030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9035751e-130GQ903575.1 Arabidopsis thaliana ecotype Columbia chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products.
GenBankGQ9035761e-130GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639091.11e-127putative RING-type E3 ubiquitin transferase C3H69 isoform X2
SwissprotE0X9N41e-125C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1J3CUI61e-125A0A1J3CUI6_NOCCA; Zinc finger CCCH domain-containing protein 69
TrEMBLA0A398A0D41e-125A0A398A0D4_BRACM; Uncharacterized protein
STRINGscaffold_503646.11e-123(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.27e-93C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]