PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g00190
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HSF
Protein Properties Length: 261aa    MW: 30279 Da    PI: 6.4266
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g00190genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.26.3e-34161082103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e++ d+++++++sws+ g sfvv+d+++f+ ++Lp yFkh+nf+SFvRQLn+YgF+k++ e+         weF ++ F  g+++ll++i+
     Tp5g00190  16 FLTKTFEMVGDPNTNHIVSWSRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIEAER---------WEFMNEGFLMGQRDLLKSIN 103
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++s+
     Tp5g00190 104 RRASS 108
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.6E-5012105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.5E-3513100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.61E-3213105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MERSSSSRAW SIPVPFLTKT FEMVGDPNTN HIVSWSRGGI SFVVWDPHSF SATILPLYFK  60
HNNFSSFVRQ LNTYGFRKIE AERWEFMNEG FLMGQRDLLK SINRRASSSS APPSLHHSQH  120
ADGHDPCVDE LRQERRVLMM EISRLRQQEQ TARCYIQAME QRINGAEKKQ THMMSFLRRA  180
VQNPTLLQQL LQQQRKEATL DQVKPEQVSE LEALALEMQG HGRQQIQDVE NELDDRFWTE  240
LLMNNDGNSK DGEEEANVNT S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-231611020125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g00190
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4467841e-146DQ446784.1 Arabidopsis thaliana clone pENTR221-At3g63350 heat shock transcription factor family protein (At3g63350) mRNA, complete cds.
GenBankDQ6531661e-146DQ653166.1 Arabidopsis thaliana clone 0000012913_0000009313 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012904.11e-137heat stress transcription factor A-7b
SwissprotQ9M1V51e-127HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLV4LV221e-140V4LV22_EUTSA; Uncharacterized protein
STRINGXP_006402285.11e-141(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-122HSF family protein