PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g00980
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 363aa    MW: 41238 Da    PI: 5.0404
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g00980genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.1e-08303359148
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 
                      r+ WT eE+e l+ +v+++  +      W+++ ++      ++Rt+ ++k++w++ l
        Tp5g00980 303 RLLWTSEEEEMLKVGVEKFAAEakknmPWRKVLEMGEkvfhQTRTPADLKDKWRNML 359
                      677******************9**********98777*****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.12E-554117IPR011011Zinc finger, FYVE/PHD-type
CDDcd154890.0098766111No hitNo description
Gene3DG3DSA:1.10.10.601.9E-9298360IPR009057Homeodomain-like
PROSITE profilePS500908.037298359IPR017877Myb-like domain
SuperFamilySSF466899.36E-10301360IPR009057Homeodomain-like
SMARTSM007170.0012302361IPR001005SANT/Myb domain
CDDcd116601.81E-10306360No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MRTKSFPVRS WRKSRDPYPS LPERFGSGEG VRDTCDERDV PHKKRHCRLG TDRGGSGPEP  60
SKFDACIVCE ISDMSVSCCS GTDCPVRFHG ECLTPEFGGS EDLANPFCPY CWFKIVVLKS  120
KSWRDKAIGA EKAVFKYLDK EIASDHGLQG ENAAYSSKED QVQVDNVSDQ PEEDTAMKED  180
KVIDNEVQTS AEDEERVATE NVQDAEDDDK SAEVQTKVNT DVSLCLSIEE AYPGKELDQV  240
QQNEKRRRRR IDMNATDDEV SSTMERNGED VTERRKLSAA TKVAAKSKTL GDISFFNKDQ  300
RRRLLWTSEE EEMLKVGVEK FAAEAKKNMP WRKVLEMGEK VFHQTRTPAD LKDKWRNMLK  360
APQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244249KRRRRR
2244250KRRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g00980
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287565.21e-127uncharacterized protein LOC17882878
TrEMBLA0A1J3J5N41e-131A0A1J3J5N4_NOCCA; Uncharacterized protein (Fragment)
STRINGBostr.2128s0072.1.p1e-138(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-06MYB_related family protein