PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g02260
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28499 Da    PI: 6.519
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g02260genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.54.1e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtfskR+ g+lKKA+ LSvLCd+eva+iifss+gkly +s+
  Tp5g02260  9 KRIENKINRQVTFSKRKSGLLKKAYQLSVLCDVEVALIIFSSSGKLYHFSN 59
               79***********************************************85 PP
2K-box89.18.4e-3084170995
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                 ++  a+s++qe++kLk+++e+L r++R +lGedL+++s++eL+ Le+qLe +l+  R++K+++ +eqi+el++ke++l ++nk+L+
  Tp5g02260  84 ESTDSAQSWCQEVTKLKSKYESLLRTHRYMLGEDLGEMSVEELETLERQLEGALSATRQRKTQVTMEQIDELRRKERQLGDINKKLK 170
                455669*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.819161IPR002100Transcription factor, MADS-box
SMARTSM004327.6E-38160IPR002100Transcription factor, MADS-box
CDDcd002655.51E-40278No hitNo description
SuperFamilySSF554556.54E-31283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-30323IPR002100Transcription factor, MADS-box
PfamPF003194.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-2885172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.85189179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009555Biological Processpollen development
GO:0010094Biological Processspecification of carpel identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRGKVEVKR IENKINRQVT FSKRKSGLLK KAYQLSVLCD VEVALIIFSS SGKLYHFSNA  60
AIERTIERYY RCKINNLDNN RLEESTDSAQ SWCQEVTKLK SKYESLLRTH RYMLGEDLGE  120
MSVEELETLE RQLEGALSAT RQRKTQVTME QIDELRRKER QLGDINKKLK FETEGQEFKG  180
FQDLLLHSDA RVGSTYCSLQ SSHHNSEDWD VGHFLQIGFQ QQYEQGDESL VLTSNVGCDV  240
ETNLTQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21169169MEF2 CHIMERA
6byy_B2e-21169169MEF2 CHIMERA
6byy_C2e-21169169MEF2 CHIMERA
6byy_D2e-21169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00417DAPTransfer from AT3G61120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g02260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138791.11e-143PREDICTED: agamous-like MADS-box protein AGL13
RefseqXP_013746326.11e-143agamous-like MADS-box protein AGL13
SwissprotQ388371e-113AGL13_ARATH; Agamous-like MADS-box protein AGL13
TrEMBLA0A397ZIS41e-142A0A397ZIS4_BRACM; Uncharacterized protein
STRINGXP_006402519.11e-132(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61120.11e-115AGAMOUS-like 13
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]