PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g02610

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GRAS

Protein Properties

Length: 634aa MW: 69202.3 Da PI: 4.9092

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g02610	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	314.7	2e-96	273	633	15	374
GRAS 15 gdlelaqalLarlselaspdgd......pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleaveg 108 ++ laq +Larl+++ +++ + p++R+a+y+teAL++ l++ pps +++++ + ++aa+++fse+sP+l+f ++taNq+Ile+++g Tp5g02610 273 NNPVLAQGILARLNHNLNSNNTninprpPFHRAASYVTEALQSLLLQ-------DSPPSLSHPHTLILRIAAYRAFSETSPFLQFVNFTANQTILESFQG 365 45569*********5555544889999*************9.......56788888899******************************* PP GRAS 109 eervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp...gEa 201 +r+Hi+Dfdi++G+QW++L+q+La R+ +++psl+iT+++sp+++ ++ el+ t+e+L++fA ++gv+fe ++l ++ l + +++ L++ + ++a Tp5g02610 366 FDRIHIVDFDIGYGGQWASLIQELAGRRnrsSSAPSLKITAFASPSTVpDEFELRFTEENLRNFAGATGVSFEMELLNMDILLNPTYWPLSLLRssdKDA 465 *********************66656688*********99*************************88888888888887666666* PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvva 299 +aVnl ++ +++ +L+++k++sP+vvv+++ +d+ n+++F +++al+yy++l++sl +++ p+++e+++++Er++++++i+ +++ Tp5g02610 466 IAVNLPISSVVSA--------YIPLILRFLKQISPNVVVCSDCSCDRnNDAPFPSCVINALQYYTSLLESLdASGNPNNQEAATSIERFFVQPSIQRLLT 557 *****666555........5788******************99******************555667777999************* PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374 ++ ++ +e+ Wr+ ++++GF+pv+ls++ ++qa++ll++ +++g+++e++ s slvl+W++++Lv+vSaW+ Tp5g02610 558 NRYRW----MEKSPPWRSLFGQCGFSPVTLSQTSETQAEYLLQRNPMRGFHLEKRqssssSTSLVLCWQKKELVAVSAWK 633 *....****************************************6656666999**************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.5	228	608	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.1E-94	273	633	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence Send to blast
MPLPFEELQG NGVVGFLDSS PQYKIWANRE KNHGRREDLC CVVGVNNGAF PEPTSVLDSI 60 RSPSPFVSSS TTTLSSSHGG PSGGGAAAAA FAGADGKCDQ MGFEDLDGVL SGSPGQEQSI 120 LRLIMSGDVV DPGSGFVGFD PGSGSDRVID NANPLFSYGF PFDEPPPPEE EEKFQITTNT 180 ETLINPNPGF FSVGSSPPAK RLNSGQPVSQ QPEAHHHHQW VPPFSDPGHE SHDPFLTPPK 240 IAGTDHDQPS TVIIDQLFNA AAELIGTTNG GDNNPVLAQG ILARLNHNLN SNNTNINPRP 300 PFHRAASYVT EALQSLLLQD SPPSLSHPHT LILRIAAYRA FSETSPFLQF VNFTANQTIL 360 ESFQGFDRIH IVDFDIGYGG QWASLIQELA GRRNRSSSAP SLKITAFASP STVPDEFELR 420 FTEENLRNFA GATGVSFEME LLNMDILLNP TYWPLSLLRS SDKDAIAVNL PISSVVSAYI 480 PLILRFLKQI SPNVVVCSDC SCDRNNDAPF PSCVINALQY YTSLLESLDA SGNPNNQEAA 540 TSIERFFVQP SIQRLLTNRY RWMEKSPPWR SLFGQCGFSP VTLSQTSETQ AEYLLQRNPM 600 RGFHLEKRQS SSSSTSLVLC WQKKELVAVS AWKC

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence Send to blast

MPLPFEELQG NGVVGFLDSS PQYKIWANRE KNHGRREDLC CVVGVNNGAF PEPTSVLDSI  60
RSPSPFVSSS TTTLSSSHGG PSGGGAAAAA FAGADGKCDQ MGFEDLDGVL SGSPGQEQSI  120
LRLIMSGDVV DPGSGFVGFD PGSGSDRVID NANPLFSYGF PFDEPPPPEE EEKFQITTNT  180
ETLINPNPGF FSVGSSPPAK RLNSGQPVSQ QPEAHHHHQW VPPFSDPGHE SHDPFLTPPK  240
IAGTDHDQPS TVIIDQLFNA AAELIGTTNG GDNNPVLAQG ILARLNHNLN SNNTNINPRP  300
PFHRAASYVT EALQSLLLQD SPPSLSHPHT LILRIAAYRA FSETSPFLQF VNFTANQTIL  360
ESFQGFDRIH IVDFDIGYGG QWASLIQELA GRRNRSSSAP SLKITAFASP STVPDEFELR  420
FTEENLRNFA GATGVSFEME LLNMDILLNP TYWPLSLLRS SDKDAIAVNL PISSVVSAYI  480
PLILRFLKQI SPNVVVCSDC SCDRNNDAPF PSCVINALQY YTSLLESLDA SGNPNNQEAA  540
TSIERFFVQP SIQRLLTNRY RWMEKSPPWR SLFGQCGFSP VTLSQTSETQ AEYLLQRNPM  600
RGFHLEKRQS SSSSTSLVLC WQKKELVAVS AWKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-32	264	633	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g02610

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006402563.1	0.0	scarecrow-like protein 22
Swissprot	Q9M000	0.0	SCL22_ARATH; Scarecrow-like protein 22
TrEMBL	V4NDF3	0.0	V4NDF3_EUTSA; Uncharacterized protein
STRING	XP_006402563.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15066	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60630.1	0.0	GRAS family protein

Publications ? help Back to Top
Gustafson AM, et al. ASRP: the Arabidopsis Small RNA Project Database. Nucleic Acids Res., 2005. 33(Database issue): p. D637-40 [PMID:15608278] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]