PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g02730
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 254aa    MW: 28117.8 Da    PI: 5.1873
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g02730genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-1970119255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Tp5g02730  70 SYRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAALAIKG 119
                6*****888.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-3170128IPR001471AP2/ERF domain
PROSITE profilePS5103223.57870127IPR001471AP2/ERF domain
PfamPF008476.1E-1370119IPR001471AP2/ERF domain
SMARTSM003805.3E-3670133IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2170127IPR016177DNA-binding domain
PRINTSPR003671.2E-107182IPR001471AP2/ERF domain
CDDcd000181.05E-3171129No hitNo description
PRINTSPR003671.2E-1093109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEKQINIESS ATHHHHQGNN ASVITTSTIA AVTSSSESWS SPKRSLLQDN EAGGKRRKSN  60
GGEDNANPTS YRGVRKRSWG KWVSEIREPK KKSRIWLGTY PTAEMAARAH DVAALAIKGN  120
SGYLNFPELS GLLPRPVSCS PKDIQAAAAK AAEATWQEPV ITEKLADELS HSELSSAQCS  180
STSSSFVFSS DTSETSSTDK ESNEETVFDL PDLFTEGLMN QNDAFRYYDS TFTWQLYGED  240
VVFRLEEPFT WLHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1565127972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00414DAPTransfer from AT3G60490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g02730
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893190.0AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116730.11e-131PREDICTED: ethylene-responsive transcription factor ERF035
SwissprotQ9M2101e-113ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLA0A397YCH91e-130A0A397YCH9_BRACM; Uncharacterized protein
TrEMBLM4CTJ51e-130M4CTJ5_BRARP; Uncharacterized protein
STRINGBra007539.1-P1e-130(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.15e-98ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]