PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g03690
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family FAR1
Protein Properties Length: 255aa    MW: 29310.9 Da    PI: 6.136
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g03690genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR194.31.5e-2990177291
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                fYn+YA++vGF +r+sk ++s+++g+ + r++vC+keg+r ++k++  k  r+raetr+gC+a++ ++ke++gkw++tk+++eHnH+l+p
  Tp5g03690  90 FYNAYATKVGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILIRKENSGKWVITKFVKEHNHPLMP 177
                9******************************************999..999************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-2790177IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMMGIPVELE VTTVENHNEL GESSGQPMIE QDDGNHNEIG ENSGQEISLE QDEKLDPDSI  60
PLAVADMAEV QADEPYVGQE FESEAAAHGF YNAYATKVGF VIRVSKLSRS RHDGSPIGRQ  120
LVCNKEGYRL PSKRDKVIRQ RAETRVGCRA MILIRKENSG KWVITKFVKE HNHPLMPGRV  180
RRGCIYDQYP NEHDKIQELM QQLAAEKKRA ATYKRHLEML FEQIEQHNES LTKRIQHIVD  240
NVRDLEQRDH QQNQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g03690
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0580890.0AY058089.1 Arabidopsis thaliana AT3g59470/T16L24_20 mRNA, complete cds.
GenBankAY1430810.0AY143081.1 Arabidopsis thaliana At3g59470/T16L24_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402686.11e-178protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_024012942.11e-179protein FAR1-RELATED SEQUENCE 8 isoform X2
RefseqXP_024012943.11e-179protein FAR1-RELATED SEQUENCE 8 isoform X2
TrEMBLA0A1J3FDP81e-177A0A1J3FDP8_NOCCA; Protein FAR1-RELATED SEQUENCE 5
TrEMBLV4LK971e-177V4LK97_EUTSA; Uncharacterized protein
STRINGBostr.20903s0171.1.p1e-178(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73022539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-179FAR1 family protein