PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g04740
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 645aa    MW: 72222.2 Da    PI: 8.9762
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g04740genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.9e-141366148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     ++ W+t+E++ll++av+++G ++W+++a +++       ++t+ +c++++++++
        Tp5g04740 13 KQTWSTWEELLLACAVHRHGIDSWDSVATEIQkhnstfRTLTGFDCRHKYHDLK 66
                     789***********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.5E-81268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-61267IPR009057Homeodomain-like
PfamPF002491.9E-131366IPR001005SANT/Myb domain
PROSITE profilePS500906.3191366IPR017877Myb-like domain
SuperFamilySSF466899.72E-71368IPR009057Homeodomain-like
CDDcd001677.02E-61566No hitNo description
SMARTSM002971.2E-16290399IPR001487Bromodomain
SuperFamilySSF473701.18E-16301406IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.7E-14301402IPR001487Bromodomain
CDDcd043697.54E-16301394No hitNo description
PfamPF004392.1E-11306384IPR001487Bromodomain
PROSITE profilePS5001412.871309380IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MAKPENDENY PEKQTWSTWE ELLLACAVHR HGIDSWDSVA TEIQKHNSTF RTLTGFDCRH  60
KYHDLKRRFS PKLVSPESAE GETVSQISSV PWLEDLRKLR VDELRREVER YDLSISSLQL  120
KVKRLEDERE KSLKETETSD LDKIAETKDN HRELGNNSDV PITEPPISPD PKDNNSPETG  180
SENTTRDRKI TQSEDKKMNR IGGDANDQKS TREDSGRGSC ESVSKESAAN SDSADPVREG  240
NDSPEFVESM CESKGEEEAN EMSDVQSSAS LPREEKVEHD QPDKEDQSLT VNKTSVKSGP  300
LIDFIEILKS HPIGSDFSRR LESQETLEYE RIIRQHIDFE MIRARVDEGY YESSKSKFFR  360
DLLLLINNAR VFYGERSSEF NSAKQLNELI KKQMTRKMSK QTSPPKEESL VTSKAEVAVL  420
SLKPKMSVSI IACRKRSSLA VRSSASATEP FKKKTKIVPT TDEKPVSEAE EEDETSDKDE  480
EPIVSKKIPR GKINSAAKKV GSRNVKPSLN DGLPSKGRSS NNSSEQKKSD QEKKGNNTNG  540
GSKKQSAASF LKRMKGASSS ETVLDTVKAD SSNGKRGAEQ RRNNSKHEKV DEGKPSAGQK  600
RITGKKPTVE KGSPAKKNTS AASKREASEK EAGSSARPKK RIRRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1636642RPKKRIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g04740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012837.10.0uncharacterized protein LOC18019798 isoform X2
TrEMBLV4LP560.0V4LP56_EUTSA; Uncharacterized protein
STRINGBostr.20903s0049.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.10.0DNA-binding bromodomain-containing protein