PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g05120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 248aa    MW: 27614.5 Da    PI: 8.4948
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g05120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.5e-07220242223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp+C+k F+++ +L +Hi + H
  Tp5g05120 220 VCPKCSKGFRDPKDLLKHIDKdH 242
                7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.51E-12457No hitNo description
PROSITE profilePS510397.8031059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.3E-101150IPR000058Zinc finger, AN1-type
PfamPF014281.3E-131349IPR000058Zinc finger, AN1-type
SMARTSM001547.8E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.7E-1091147IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.58E-993145No hitNo description
PROSITE profilePS510398.01698151IPR000058Zinc finger, AN1-type
PfamPF014288.3E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.013101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.203219247IPR007087Zinc finger, C2H2
PROSITE patternPS000280221242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CIQVFCLDHR SYMKHNCPKG NRGDVTVVIC  60
PLCAKGVRLN PDEDPNITWE KHVNTDCDPS NYEKTVKKKK CPVPRCRESL TFSNTIKCRD  120
CNIDHCLKHR FGLDHSCSGP KKPESSFSLM GFLSTNTKEA PASSSSSRWS SLLASAEASI  180
SRLGNDISQK LQLTSGGDGN LEKMQESNGK QIRGKVTVDV CPKCSKGFRD PKDLLKHIDK  240
DHRGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g05120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190960.0AK119096.1 Arabidopsis thaliana At3g57480 mRNA for unknown protein, complete cds, clone: RAFL21-44-N05.
GenBankBT0062230.0BT006223.1 Arabidopsis thaliana At3g57480 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402873.11e-161zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ9SCM41e-161SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLV4NE371e-160V4NE37_EUTSA; Uncharacterized protein
STRINGXP_006402873.11e-161(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-151C2H2 family protein
Publications ? help Back to Top
  1. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]