PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g05800
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 222aa    MW: 25153.6 Da    PI: 6.146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g05800genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.8e-124895355
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               r+h+e+ErrRR+riNs +++Lr+ll  +      K +Ka+ L k+v+ +k+Lq
  Tp5g05800 48 RNHKEAERRRRERINSHLNKLRDLLSCN-----SKTDKATLLAKVVQRVKELQ 95
               58***********************997.....7*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.8754594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-94895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1248111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-1348102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1051100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.6E-5130207No hitNo description
Gene3DG3DSA:3.30.70.2604.1E-5131207No hitNo description
CDDcd048735.24E-4132198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MQPEISDQIF YSILTGGFCA SSTTTASSFY PFAIEDTISK DKALATLRNH KEAERRRRER  60
INSHLNKLRD LLSCNSKTDK ATLLAKVVQR VKELQRQTLE ISNETLPSET DEISVVNFED  120
CSNDDGRIIF KISFCCEDRP DLLQDLLEIL KSLKMETLYA DMTTIGGRTR NDLVVVADKE  180
QHSVESVKFL QNALKSLLER SSQSVMMGRG GGGDRRLEHY II
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15358ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g05800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402950.11e-116putative transcription factor bHLH107
SwissprotQ9LET01e-109BH107_ARATH; Putative transcription factor bHLH107
TrEMBLV4LWX31e-114V4LWX3_EUTSA; Uncharacterized protein
STRINGXP_006402950.11e-115(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-110bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]