PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g07100
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 358aa    MW: 39336.2 Da    PI: 9.1474
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g07100genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.14.5e-3972131362
     zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                e+alkcprCdstntkfCy+nny+l+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+
  Tp5g07100  72 EAALKCPRCDSTNTKFCYFNNYNLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 131
                6789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3555124IPR003851Zinc finger, Dof-type
PfamPF027012.2E-3274129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.46975129IPR003851Zinc finger, Dof-type
PROSITE patternPS01361077113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVFSSLPMNQ FDSHNWQQQG NTQQLDHVTS DQNPNFNIPQ FSSPPASQAG SSQARVNSMV  60
ERARIAKVPL PEAALKCPRC DSTNTKFCYF NNYNLTQPRH FCKTCRRYWT RGGALRNVPV  120
GGGFRRNKRS KSNGGGRSKS TVVVSADNNN TTSPLTSHPS YSNPSKFLSY GQIPGFSSNL  180
PILPPFQSLG DYNSSNIGLD QISNTMSGMM SSSGGILDPW RISSLQQSQQ FPFLINTTGL  240
EQSSNVMYPL LEGNEGVNQA NPQQESSDYS TQLRSKPLMD MALRGDQAAQ ARNVKAEEND  300
QDPDRNGNGV NNLSRNFLGN INIKTAGNDE YTSWGGLSSN NSSWTGFSSN NSTNHLSF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g07100
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013660.10.0dof zinc finger protein DOF3.6 isoform X2
SwissprotQ9M2U11e-171DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A1J3I3S00.0A0A1J3I3S0_NOCCA; Dof zinc finger protein DOF3.6
STRINGXP_006403466.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.21e-145OBF-binding protein 3