PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g07990

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

SRS

Protein Properties

Length: 251aa MW: 27289.8 Da PI: 10.3375

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g07990	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	170.2	1.1e-52	95	241	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103 ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp++ +++++ ++ ++s++++++k+ + + k ++ +s + +s+++s++e++++ Tp5g07990 95 EEKVCRDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSSSSSHHRSTSR-----TSSSSSDRKKKLKIS-DKPTNPASVSFVSTTTSRQETSFK 188 6789*************************************998886433322.....222233333333332.333333444555666666666666 PP DUF702 104 s.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 + lP +++++avf+++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++ Tp5g07990 189 EgLPGKIEAPAVFKRTRVTAISNnEQAEIGYQATVTISGHVFKGFLHYHGVDH 241 66***************9868899*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.0E-47	97	240	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.5E-26	98	138	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.7E-28	191	239	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MAKKPIYAVA NPPSLLSWPP QQQPSSSSTP FSVAANIPDH SSVSAAGIST PDYMLGLRNI 60 ILLPPPAPQI TQLSPSPVNF AAVEGNNRSR NNNVEEKVCR DCGNRAKKEC LFERCRTCCK 120 SRGYNCATHV KSTWVPSSSS SSHHRSTSRT SSSSSDRKKK LKISDKPTNP ASVSFVSTTT 180 SRQETSFKEG LPGKIEAPAV FKRTRVTAIS NNEQAEIGYQ ATVTISGHVF KGFLHYHGVD 240 HNKAFPCLSK K

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g07990

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF446889	2e-74	AF446889.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.
GenBank	AY052675	2e-74	AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009116129.2	1e-119	PREDICTED: protein SHI RELATED SEQUENCE 6-like
Swissprot	Q9M2U4	6e-98	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	M4CS80	1e-118	M4CS80_BRARP; Uncharacterized protein
STRING	Bra007072.1-P	1e-118	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	3e-98	SHI-related sequence 6

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]