PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g08020

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Trihelix

Protein Properties

Length: 305aa MW: 34412.9 Da PI: 9.9576

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g08020	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.6	1.2e-16	40	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v+ ++ +++ ++++qCk+k+e+++kry+ + +++ + s++p++++l+ Tp5g08020 40 EWSEGAVSSLLEAYETKWVLRNRAKLKGQDWEDVATHVssraGHTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYHRLD 123 5***********************************854444444556679*************9997......46****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-20	38	125	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEDGDSNQEN PQSLHTNHDD FSPKKPPASS IVVDRLKRDE WSEGAVSSLL EAYETKWVLR 60 NRAKLKGQDW EDVATHVSSR AGHTKSPKTQ TQCKNKIESM KKRYRSESAT ADGSSWPLYH 120 RLDHLLRGNA SVSVQPQNCS APLLLLEPPS PVVTHPPQPP PAAQISHGSN GVGRIPKEDE 180 FKARLSDHKP EKAKEMDTDS STPVICRDKA KVRPKKVRRR YKEEKEEIAG SIRWLAEVVM 240 RSERARMETM KEIERMRAEA EVKRGEMDLK RTEIMANTQI EIARLFAVAA SGHKGVDSSL 300 RIGRN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g08020

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006403581.1	0.0	trihelix transcription factor ASIL1
TrEMBL	V4LMS5	0.0	V4LMS5_EUTSA; Uncharacterized protein
STRING	XP_006403581.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9859	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-138	sequence-specific DNA binding transcription factors