PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g08750
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 172aa    MW: 19534.5 Da    PI: 10.2243
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g08750genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001288110123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC+ Cg++F +   L  H+r+H
  Tp5g08750  88 HKCSFCGQMFGTGQALGGHMRKH 110
                79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.06E-741110No hitNo description
PfamPF139126.8E-114267IPR007087Zinc finger, C2H2
SMARTSM003550.434365IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9724370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PfamPF139126.0E-987112IPR007087Zinc finger, C2H2
SMARTSM003550.009888110IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.53688110IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKRDRSDCEE SITHIDVVKS LMMLSRSFVV KQSTGSRTND KYFECKTCNR KFDSFQALGG  60
HRASHKKPKL SIDQEQVKHI RNNENDVHKC SFCGQMFGTG QALGGHMRKH RASLITKQSV  120
ASSVVYTSPV LTRCNSSKRV LRLDLNLTPL ENDLVYVFGK NLVPQIDLKF VN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g08750
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403670.11e-98zinc finger protein ZAT11
SwissprotQ9SLD47e-74ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLV4LZ033e-97V4LZ03_EUTSA; Uncharacterized protein
STRINGBostr.11793s0034.1.p2e-98(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-98C2H2 family protein