PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g09130
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 256aa    MW: 30633.9 Da    PI: 6.3857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g09130genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-181158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W +eEde+lv+ v++lG+++W++ ar  g++R++k+c++rw +yl
        Tp5g09130 11 RGPWLEEEDEQLVKFVTLLGKRRWDSLARVSGLKRSGKSCRLRWMNYL 58
                     89********************************************97 PP
2Myb_DNA-binding51.62.2e-1664108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE+ ++ ++++++G++ W+ Iar+++ gRt++++k++w+++
        Tp5g09130  64 RGPMSQEEEMIIFQLHALWGNK-WSMIARRLP-GRTDNEVKNYWRTH 108
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.433658IPR017930Myb domain
SuperFamilySSF466893.67E-279105IPR009057Homeodomain-like
SMARTSM007174.1E-141060IPR001005SANT/Myb domain
PfamPF002491.2E-141158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-201265IPR009057Homeodomain-like
CDDcd001676.82E-91358No hitNo description
PROSITE profilePS5129425.41159113IPR017930Myb domain
SMARTSM007175.7E-1663111IPR001005SANT/Myb domain
PfamPF002494.9E-1464108IPR001005SANT/Myb domain
CDDcd001672.24E-966109No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2366112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDLKKEETLR RGPWLEEEDE QLVKFVTLLG KRRWDSLARV SGLKRSGKSC RLRWMNYLNP  60
SLKRGPMSQE EEMIIFQLHA LWGNKWSMIA RRLPGRTDNE VKNYWRTHFR KKEEAQNYAR  120
YKNNVFSIDN LTDWSGNTGE ELFRKYKETE TTRTRRTQEH GFDEIVKEHN QRSVESDKET  180
IGSIFERESF GVMNSPYENR ISDWISEIST DQSEANHFED NSSCDNENNS KNNLRIGSWW  240
FQESRDFEEF SCSLWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2791122104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g09130
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172561e-133AK117256.1 Arabidopsis thaliana At3g53200 mRNA for putative transcription factor (MYB27), complete cds, clone: RAFL16-81-D10.
GenBankAY5195991e-133AY519599.1 Arabidopsis thaliana MYB transcription factor (At3g53200) mRNA, complete cds.
GenBankBT0052571e-133BT005257.1 Arabidopsis thaliana At3g53200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293114.11e-137transcription factor MYB27
SwissprotQ9SCP11e-131MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A087GXG71e-141A0A087GXG7_ARAAL; Uncharacterized protein
STRINGA0A087GXG71e-142(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-120myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]