PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g10310
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 192aa    MW: 21885.5 Da    PI: 7.1944
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g10310genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.6e-105398550
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
                + rr   NReA +++R++Kka+++ Le++vk L+  N+ L+ +l+
  Tp5g10310 53 SNKRRSCGNREAVKKYREKKKARTAYLEDEVKRLQFLNEHLIRKLQ 98
               67899999**********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-1145115No hitNo description
SMARTSM003382.0E-648116IPR004827Basic-leucine zipper domain
PfamPF077165.5E-1549105IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.75E-75299No hitNo description
CDDcd146861.36E-96199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDEEEIRASV GCNHTHSCNP PAPEDASHSH TCFHTHTHLI VPGQQENDHS DSSNKRRSCG  60
NREAVKKYRE KKKARTAYLE DEVKRLQFLN EHLIRKLQSQ ATVETEVIRL RTLLVGIQGN  120
IDGELGGFSF QKQSNDSGFV FKEGRMDRHT ISVPCNHTMN VMCEVPRAEC EESKALHEPI  180
HSFFPHSPPF SR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g10310
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18703123, PubMed:19248824). Induced by osmotic stress (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513653.13e-99PREDICTED: basic leucine zipper 24-like
RefseqXP_018513654.13e-99PREDICTED: basic leucine zipper 24-like
RefseqXP_022573725.13e-99basic leucine zipper 24 isoform X1
RefseqXP_022573726.13e-99basic leucine zipper 24 isoform X1
RefseqXP_022573727.13e-99basic leucine zipper 24 isoform X1
SwissprotQ8GTS19e-90BZP24_ARATH; Basic leucine zipper 24
TrEMBLM4EXC71e-105M4EXC7_BRARP; Uncharacterized protein
STRINGBra033464.1-P1e-105(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151721518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51960.16e-73basic leucine zipper 24