PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g11490
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family BES1
Protein Properties Length: 296aa    MW: 31932.7 Da    PI: 9.4624
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g11490genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822212.61e-65181631145
     DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslks 100
                g++gr+ptwkErEnnkrRERrRRaiaaki++GLR+qGnyklpk++DnneVlkALc eAGw+v++DGttyrkgs+p+    +  +  ++s +ss+q+s++s
  Tp5g11490  18 GATGRMPTWKERENNKRRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCVEAGWIVHEDGTTYRKGSRPT----TEATPPRVSACSSIQLSPQS 113
                589*************************************************************************....7788999************* PP

     DUF822 101 salaspvesysaspksssfpspssldsislasa.....asllpvlsvlsl 145
                sa++sp++sy+asp+sss+psp+++d+++++ +     a l+p+l++l++
  Tp5g11490 114 SAFQSPIPSYQASPASSSYPSPTRFDQNPIRFDpnqssAYLIPYLQNLAS 163
                ****************************9975556666888899888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.2E-6320161IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MTASGGGGGG GLTAAGAGAT GRMPTWKERE NNKRRERRRR AIAAKIFTGL RSQGNYKLPK  60
HCDNNEVLKA LCVEAGWIVH EDGTTYRKGS RPTTEATPPR VSACSSIQLS PQSSAFQSPI  120
PSYQASPASS SYPSPTRFDQ NPIRFDPNQS SAYLIPYLQN LASTGNLAPL RISNSAPVTP  180
PISSPRSSNP RLPKWQISNF PISAPSSPTR RLHNHYTSIP ECDESDVSTV DSCRWTRFQP  240
VTVSQTCPPS PTFNLVENSV CVGGGDVSVK PWEGEKIHDV GIDDLELTLG NAKGRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A5e-2522106372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B5e-2522106372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C5e-2522106372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D5e-2522106372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g11490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891891e-165AC189189.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404006.11e-165BES1/BZR1 homolog protein 1
SwissprotQ9S7F31e-141BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBLV4LNV81e-164V4LNV8_EUTSA; Uncharacterized protein
STRINGXP_006404006.11e-165(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144671721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50750.11e-117BES1/BZR1 homolog 1