PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g11700

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

LBD

Protein Properties

Length: 121aa MW: 14044.6 Da PI: 9.1794

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g11700	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.7	1.4e-31	4	102	2	100
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 Ca Ck +kC+++C+l py+pa++p+k+a++ k+FG++nv+k+lk+l++ +r++ ++sl++eAear+r+P G+vg++++lq+++++lk +l+ +++e Tp5g11700 4 CATCKETMQKCTQECMLLPYLPANKPEKYACLSKVFGMRNVVKILKDLDPVHRQACVDSLCFEAEARIREPLFGSVGIMHRLQRRVQELKLNLENAQRE 102 ******************************************************************************************999998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.798	2	103	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-30	4	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MELCATCKET MQKCTQECML LPYLPANKPE KYACLSKVFG MRNVVKILKD LDPVHRQACV 60 DSLCFEAEAR IREPLFGSVG IMHRLQRRVQ ELKLNLENAQ RELIKIAHGR NHQHQISRSR 120 L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-27	4	109	12	117	LOB family transfactor Ramosa2.1
5ly0_B	3e-27	4	109	12	117	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g11700

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A397YVE5	5e-49	A0A397YVE5_BRACM; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	3e-31	ASYMMETRIC LEAVES 2-like 1