PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g12320
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 188aa    MW: 21822.5 Da    PI: 7.464
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g12320genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.9e-1176134563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                +r +rk +NRe+A+rsR +K++ +ee +    +L++eN++L ++l     ++++ k+e+
  Tp5g12320  76 RRKKRKLSNRESAKRSRVKKQKHLEEMTIQLNQLKSENRELTNQLRYVYYHCQRAKMEN 134
                799****************************************9999999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.4E-1069123No hitNo description
SMARTSM003382.6E-1172136IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.56574137IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-976124No hitNo description
PfamPF001701.3E-876134IPR004827Basic-leucine zipper domain
CDDcd147021.44E-1877121No hitNo description
PROSITE patternPS0003607994IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MMSTISSVFS CEPGFTTPVP AFETGFTPWD ISHLFSVFDS SSTDLIPDSA HEYLSPGSVN  60
RTGSDVVPTD NYSDERRKKR KLSNRESAKR SRVKKQKHLE EMTIQLNQLK SENRELTNQL  120
RYVYYHCQRA KMENDRLRLE HRMLHDTLLN IRQVLMSPQI EENSDCVTWP YDNSYCCYGP  180
TRSVACNL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17481ERRKKRKL
27596RRKKRKLSNRESAKRSRVKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g12320
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629467.14e-94PREDICTED: ocs element-binding factor 1-like
TrEMBLA0A0D3A9I79e-93A0A0D3A9I7_BRAOL; Uncharacterized protein
STRINGBo1g080160.12e-93(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.18e-80basic leucine-zipper 5