PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g13380
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NF-YC
Protein Properties Length: 242aa    MW: 27072.4 Da    PI: 5.5879
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g13380genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1474.1e-46441452100
      NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                l++fw +q   +e+++dfknh++Pl ri++i+kad+dv+mis e+P+l++kacelfilelt+rsw ha e+k rtl+k+diaaa+trt +fdf+ di  r
  Tp5g13380  44 LRMFWFYQrkeVEQVSDFKNHQVPLQRIRRIMKADDDVRMISPEVPILFAKACELFILELTIRSWFHALEKKSRTLQKNDIAAAITRTATFDFMEDIATR 143
                899**9888889**************************************************************************************99 PP

      NF-YC  99 de 100
                d+
  Tp5g13380 144 DD 145
                97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.02E-2625137IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.1E-3057129IPR009072Histone-fold
PfamPF008081.5E-1666128IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDNYSQQPPP SAFGIPPLPP GISVFAAGVA SYHHHLQQQQ QQYLRMFWFY QRKEVEQVSD  60
FKNHQVPLQR IRRIMKADDD VRMISPEVPI LFAKACELFI LELTIRSWFH ALEKKSRTLQ  120
KNDIAAAITR TATFDFMEDI ATRDDENKEE PGTEGMMTPA ASCVPYYYPP VGQPTGPGGM  180
WQRSRGQGNL DGQMDQSGVY FQPPSQGWQS FGQTFLLSSP TGDDVSHGSG GSIGQGNLDG  240
QV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-4151143395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g13380
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290279.12e-92nuclear transcription factor Y subunit C-1
SwissprotQ9FMV59e-82NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLR0FL356e-91R0FL35_9BRAS; Uncharacterized protein
STRINGCagra.0134s0008.1.p1e-92(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-80nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Qi M, et al.
    QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
    Plant Biotechnol. J., 2019. 17(1): p. 252-263
    [PMID:29878511]