PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g15090
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 609aa    MW: 69223.2 Da    PI: 5.1315
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g15090genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS401.39.9e-1232346041374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                +++lL++cA+av+s d++ a + L++++ ++s++gd++qRl  yf+eAL ar+++    ++ +  + ++s++ +++ l+a+k f++++P+l +++ taN+
  Tp5g15090 234 MRNLLMQCAQAVASFDQRIAAEKLKEIRAHSSSNGDATQRLGYYFAEALDARITG----TMTTPVSATSSRTPMVDILKAYKEFVQACPTLIMCYYTANR 329
                579****************************************************....333333333444459************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                +I+e +++++++HiiDf+i +G+QWp+L+qaL+sRp+gpp lR+Tg++ p++g   +e++eetg+rL++f+++++vpfe+++ +ak++e+++l+eL +++
  Tp5g15090 330 TIYELASKASTLHIIDFGILYGFQWPCLIQALSSRPGGPPVLRVTGIELPQPGfrPSERVEETGRRLKRFCDKFKVPFEYSF-IAKNWETITLDELVINS 428
                ****************************************************9*****************************.7**************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                +E+++Vn++l+l++++de+vsl+s+rd+ Lkl+++++P ++v++e +  +ns+ Fl+rf eal ++s+lfd++e+++++e++ r+ vE+el+ r++++v+
  Tp5g15090 429 EETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPGLFVFAEINGMYNSPYFLTRFKEALFHCSSLFDMFETNISEENDCRTLVEKELIIRDAMSVI 528
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                acegaer++r et+++W+ r+ +aGFkp++l+++++k+ k l+r+ + + + ++++++++++gWk+r L+++S+W+
  Tp5g15090 529 ACEGAERFARPETYKQWQVRILRAGFKPAKLNKQIMKEGKELVRERYHKDFVIDNDNHWMFQGWKGRVLYALSCWK 604
                ***********************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.133208584IPR005202Transcription factor GRAS
PfamPF035143.4E-120234604IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MDAILQVPVD GFKFENGSGS CCKPRNNLDS GTNHFTCFNE STESQNLSPT ESTESQNTSS  60
PTEPTVCSDY HPFFKYINDM LMEEDLQGQS RMLEDSLALQ AAERSFFQVL QEDQTLLSSD  120
KISGDHDDCS LANFSSLTNL HQPISGFTGS PEILEESSRR YRLRDDDEED DLEGGRKSKL  180
PAISTVDELE EKFEEVLLVC QKNDHGEATP NKTGQAKSSS SRSKPRKLDQ PVDMRNLLMQ  240
CAQAVASFDQ RIAAEKLKEI RAHSSSNGDA TQRLGYYFAE ALDARITGTM TTPVSATSSR  300
TPMVDILKAY KEFVQACPTL IMCYYTANRT IYELASKAST LHIIDFGILY GFQWPCLIQA  360
LSSRPGGPPV LRVTGIELPQ PGFRPSERVE ETGRRLKRFC DKFKVPFEYS FIAKNWETIT  420
LDELVINSEE TTVVNCILRL QYTPDETVSL NSPRDTALKL FRDINPGLFV FAEINGMYNS  480
PYFLTRFKEA LFHCSSLFDM FETNISEEND CRTLVEKELI IRDAMSVIAC EGAERFARPE  540
TYKQWQVRIL RAGFKPAKLN KQIMKEGKEL VRERYHKDFV IDNDNHWMFQ GWKGRVLYAL  600
SCWKPAKKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4624060525380Protein SCARECROW
5b3h_A3e-4624060524379Protein SCARECROW
5b3h_D3e-4624060524379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g15090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527110.0AK352711.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-F16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013711631.10.0scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLE4MW140.0E4MW14_EUTHA; mRNA, clone: RTFL01-05-F16
TrEMBLV4MXT70.0V4MXT7_EUTSA; Uncharacterized protein
STRINGXP_006418880.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]